Experiment: Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0649 and Atu0650 are separated by 152 nucleotides Atu0650 and Atu0651 are separated by 119 nucleotides
Atu0649: Atu0649 - cyclopropane-fatty-acyl-phospholipid synthase, at 641,451 to 642,707
Atu0649
Atu0650: Atu0650 - hypothetical protein, at 642,860 to 643,660
Atu0650
Atu0651: Atu0651 - 4-hydroxybenzoate octaprenyltransferase, at 643,780 to 644,733
Atu0651
Position (kb) 642
643
644 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 641.975 kb on - strand, within Atu0649 at 641.975 kb on - strand, within Atu0649 at 642.042 kb on - strand, within Atu0649 at 642.047 kb on - strand, within Atu0649 at 642.077 kb on - strand, within Atu0649 at 642.238 kb on + strand, within Atu0649 at 642.249 kb on + strand, within Atu0649 at 642.288 kb on + strand, within Atu0649 at 642.296 kb on - strand, within Atu0649 at 642.301 kb on - strand, within Atu0649 at 642.384 kb on + strand, within Atu0649 at 642.404 kb on + strand, within Atu0649 at 642.563 kb on - strand, within Atu0649 at 642.644 kb on + strand at 642.649 kb on + strand at 642.657 kb on - strand at 642.708 kb on + strand at 642.787 kb on + strand at 642.862 kb on + strand at 642.921 kb on - strand at 642.921 kb on - strand at 642.974 kb on + strand, within Atu0650 at 643.072 kb on - strand, within Atu0650 at 643.120 kb on - strand, within Atu0650 at 643.130 kb on - strand, within Atu0650 at 643.183 kb on - strand, within Atu0650 at 643.206 kb on + strand, within Atu0650 at 643.211 kb on + strand, within Atu0650 at 643.211 kb on + strand, within Atu0650 at 643.214 kb on - strand, within Atu0650 at 643.352 kb on - strand, within Atu0650 at 643.352 kb on - strand, within Atu0650 at 643.381 kb on - strand, within Atu0650 at 643.402 kb on + strand, within Atu0650 at 643.410 kb on - strand, within Atu0650 at 643.541 kb on + strand, within Atu0650 at 643.652 kb on - strand at 643.654 kb on + strand at 643.654 kb on + strand at 643.654 kb on + strand at 643.662 kb on - strand at 643.662 kb on - strand at 643.662 kb on - strand at 643.662 kb on - strand at 643.662 kb on - strand at 643.668 kb on + strand at 643.668 kb on + strand at 643.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 641,975 - Atu0649 0.42 +1.5 641,975 - Atu0649 0.42 +0.8 642,042 - Atu0649 0.47 -1.6 642,047 - Atu0649 0.47 -0.2 642,077 - Atu0649 0.50 +0.4 642,238 + Atu0649 0.63 -0.7 642,249 + Atu0649 0.63 +0.2 642,288 + Atu0649 0.67 -1.5 642,296 - Atu0649 0.67 +0.6 642,301 - Atu0649 0.68 +0.2 642,384 + Atu0649 0.74 -1.6 642,404 + Atu0649 0.76 -0.1 642,563 - Atu0649 0.88 +1.0 642,644 + -0.1 642,649 + +0.4 642,657 - -0.7 642,708 + +0.5 642,787 + +0.5 642,862 + -1.3 642,921 - -3.3 642,921 - -0.6 642,974 + Atu0650 0.14 +0.3 643,072 - Atu0650 0.26 -1.5 643,120 - Atu0650 0.32 -0.2 643,130 - Atu0650 0.34 -2.9 643,183 - Atu0650 0.40 -0.1 643,206 + Atu0650 0.43 +0.5 643,211 + Atu0650 0.44 -0.1 643,211 + Atu0650 0.44 +0.3 643,214 - Atu0650 0.44 -0.9 643,352 - Atu0650 0.61 -0.4 643,352 - Atu0650 0.61 +0.7 643,381 - Atu0650 0.65 -2.3 643,402 + Atu0650 0.68 -1.4 643,410 - Atu0650 0.69 -0.2 643,541 + Atu0650 0.85 +0.2 643,652 - -0.8 643,654 + +0.3 643,654 + -0.9 643,654 + +0.6 643,662 - -1.4 643,662 - +0.2 643,662 - -0.0 643,662 - -1.2 643,662 - -0.6 643,668 + +0.9 643,668 + -0.6 643,734 + +0.6
Or see this region's nucleotide sequence