Experiment: Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0891 and Atu0892 are separated by 10 nucleotides Atu0892 and Atu0893 are separated by 392 nucleotides Atu0893 and Atu0894 overlap by 8 nucleotides
Atu0891: Atu0891 - cation efflux system protein, at 881,927 to 882,934
Atu0891
Atu0892: Atu0892 - hypothetical protein, at 882,945 to 883,232
Atu0892
Atu0893: Atu0893 - ABC transporter, nucleotide binding/ATPase protein, at 883,625 to 884,722
Atu0893
Atu0894: Atu0894 - ABC transporter, membrane spanning protein, at 884,715 to 885,623
Atu0894
Position (kb) 883
884
885 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 882.663 kb on + strand, within Atu0891 at 882.708 kb on - strand, within Atu0891 at 882.761 kb on + strand, within Atu0891 at 882.782 kb on - strand, within Atu0891 at 882.884 kb on + strand at 882.916 kb on - strand at 882.981 kb on + strand, within Atu0892 at 883.002 kb on + strand, within Atu0892 at 883.060 kb on + strand, within Atu0892 at 883.060 kb on + strand, within Atu0892 at 883.152 kb on + strand, within Atu0892 at 883.273 kb on + strand at 883.398 kb on + strand at 883.414 kb on + strand at 883.422 kb on - strand at 883.432 kb on - strand at 883.434 kb on + strand at 883.471 kb on - strand at 883.481 kb on + strand at 883.505 kb on + strand at 883.513 kb on - strand at 883.531 kb on - strand at 883.713 kb on - strand at 883.718 kb on - strand at 883.819 kb on - strand, within Atu0893 at 883.845 kb on + strand, within Atu0893 at 883.853 kb on - strand, within Atu0893 at 883.977 kb on - strand, within Atu0893 at 884.040 kb on + strand, within Atu0893 at 884.119 kb on - strand, within Atu0893 at 884.188 kb on + strand, within Atu0893 at 884.257 kb on + strand, within Atu0893 at 884.257 kb on + strand, within Atu0893 at 884.319 kb on + strand, within Atu0893 at 884.398 kb on - strand, within Atu0893 at 884.587 kb on - strand, within Atu0893 at 884.595 kb on - strand, within Atu0893 at 884.599 kb on + strand, within Atu0893 at 884.607 kb on - strand, within Atu0893 at 884.607 kb on - strand, within Atu0893 at 884.623 kb on + strand at 884.623 kb on + strand at 884.629 kb on - strand at 884.720 kb on - strand at 884.801 kb on + strand at 884.809 kb on - strand, within Atu0894 at 884.893 kb on - strand, within Atu0894 at 884.952 kb on + strand, within Atu0894 at 885.098 kb on - strand, within Atu0894 at 885.122 kb on - strand, within Atu0894 at 885.171 kb on + strand, within Atu0894 at 885.502 kb on + strand, within Atu0894 at 885.568 kb on - strand at 885.607 kb on + strand at 885.669 kb on - strand at 885.683 kb on - strand at 885.684 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 882,663 + Atu0891 0.73 -0.3 882,708 - Atu0891 0.77 +0.2 882,761 + Atu0891 0.83 +1.2 882,782 - Atu0891 0.85 -0.2 882,884 + +0.1 882,916 - -1.9 882,981 + Atu0892 0.12 -1.0 883,002 + Atu0892 0.20 -1.0 883,060 + Atu0892 0.40 -2.8 883,060 + Atu0892 0.40 +0.0 883,152 + Atu0892 0.72 +0.1 883,273 + -0.6 883,398 + +0.9 883,414 + +0.5 883,422 - -1.4 883,432 - +0.2 883,434 + +0.1 883,471 - -1.4 883,481 + -0.1 883,505 + +0.7 883,513 - +0.9 883,531 - +0.3 883,713 - -0.3 883,718 - -0.7 883,819 - Atu0893 0.18 -0.1 883,845 + Atu0893 0.20 +2.3 883,853 - Atu0893 0.21 -0.1 883,977 - Atu0893 0.32 -0.2 884,040 + Atu0893 0.38 +1.3 884,119 - Atu0893 0.45 -0.2 884,188 + Atu0893 0.51 -0.2 884,257 + Atu0893 0.58 +2.7 884,257 + Atu0893 0.58 +0.0 884,319 + Atu0893 0.63 -1.0 884,398 - Atu0893 0.70 +0.3 884,587 - Atu0893 0.88 -0.5 884,595 - Atu0893 0.88 -2.4 884,599 + Atu0893 0.89 -0.2 884,607 - Atu0893 0.89 -0.5 884,607 - Atu0893 0.89 +1.5 884,623 + +0.3 884,623 + -0.0 884,629 - +0.3 884,720 - -0.2 884,801 + +1.3 884,809 - Atu0894 0.10 -0.5 884,893 - Atu0894 0.20 -0.5 884,952 + Atu0894 0.26 +1.3 885,098 - Atu0894 0.42 +0.8 885,122 - Atu0894 0.45 -1.7 885,171 + Atu0894 0.50 +2.2 885,502 + Atu0894 0.87 +1.3 885,568 - +0.0 885,607 + +0.8 885,669 - +0.2 885,683 - +0.0 885,684 + -0.9
Or see this region's nucleotide sequence