Experiment: Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3863 and Atu3864 are separated by 130 nucleotides Atu3864 and Atu3865 are separated by 213 nucleotides
Atu3863: Atu3863 - ABC transporter permease, at 951,813 to 953,294
Atu3863
Atu3864: Atu3864 - hypothetical protein, at 953,425 to 953,697
Atu3864
Atu3865: Atu3865 - hypothetical protein, at 953,911 to 957,237
Atu3865
Position (kb) 953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 952.493 kb on - strand, within Atu3863 at 952.617 kb on - strand, within Atu3863 at 952.619 kb on + strand, within Atu3863 at 952.624 kb on + strand, within Atu3863 at 952.624 kb on + strand, within Atu3863 at 952.624 kb on + strand, within Atu3863 at 952.624 kb on + strand, within Atu3863 at 952.627 kb on - strand, within Atu3863 at 952.632 kb on - strand, within Atu3863 at 952.632 kb on - strand, within Atu3863 at 952.729 kb on + strand, within Atu3863 at 952.729 kb on + strand, within Atu3863 at 952.764 kb on + strand, within Atu3863 at 952.799 kb on + strand, within Atu3863 at 952.904 kb on + strand, within Atu3863 at 952.954 kb on + strand, within Atu3863 at 952.960 kb on + strand, within Atu3863 at 952.995 kb on - strand, within Atu3863 at 952.995 kb on - strand, within Atu3863 at 953.026 kb on + strand, within Atu3863 at 953.143 kb on - strand, within Atu3863 at 953.180 kb on + strand at 953.180 kb on + strand at 953.180 kb on + strand at 953.188 kb on - strand at 953.251 kb on + strand at 953.251 kb on + strand at 953.265 kb on - strand at 953.280 kb on + strand at 953.412 kb on - strand at 953.439 kb on - strand at 953.472 kb on - strand, within Atu3864 at 953.515 kb on + strand, within Atu3864 at 953.515 kb on + strand, within Atu3864 at 953.595 kb on - strand, within Atu3864 at 953.595 kb on - strand, within Atu3864 at 953.674 kb on - strand at 953.709 kb on - strand at 953.709 kb on - strand at 953.711 kb on + strand at 953.752 kb on + strand at 953.752 kb on + strand at 953.774 kb on - strand at 953.788 kb on - strand at 953.808 kb on - strand at 953.859 kb on + strand at 953.909 kb on - strand at 953.914 kb on - strand at 953.914 kb on - strand at 953.978 kb on - strand at 954.006 kb on + strand at 954.009 kb on + strand at 954.017 kb on - strand at 954.058 kb on + strand at 954.140 kb on - strand at 954.168 kb on - strand at 954.284 kb on - strand, within Atu3865 at 954.320 kb on + strand, within Atu3865 at 954.320 kb on + strand, within Atu3865 at 954.328 kb on - strand, within Atu3865 at 954.408 kb on + strand, within Atu3865 at 954.524 kb on + strand, within Atu3865 at 954.608 kb on - strand, within Atu3865 at 954.641 kb on + strand, within Atu3865 at 954.644 kb on - strand, within Atu3865 at 954.649 kb on - strand, within Atu3865 at 954.649 kb on - strand, within Atu3865 at 954.649 kb on - strand, within Atu3865 at 954.654 kb on - strand, within Atu3865 at 954.685 kb on - strand, within Atu3865 at 954.685 kb on - strand, within Atu3865
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 952,493 - Atu3863 0.46 -0.5 952,617 - Atu3863 0.54 +0.3 952,619 + Atu3863 0.54 +1.1 952,624 + Atu3863 0.55 +1.9 952,624 + Atu3863 0.55 -0.9 952,624 + Atu3863 0.55 +0.6 952,624 + Atu3863 0.55 +0.2 952,627 - Atu3863 0.55 +0.6 952,632 - Atu3863 0.55 -0.1 952,632 - Atu3863 0.55 -0.8 952,729 + Atu3863 0.62 +0.4 952,729 + Atu3863 0.62 -0.6 952,764 + Atu3863 0.64 +0.5 952,799 + Atu3863 0.67 -0.6 952,904 + Atu3863 0.74 -2.1 952,954 + Atu3863 0.77 -0.2 952,960 + Atu3863 0.77 -0.5 952,995 - Atu3863 0.80 +0.8 952,995 - Atu3863 0.80 -0.2 953,026 + Atu3863 0.82 +0.6 953,143 - Atu3863 0.90 +0.3 953,180 + -0.1 953,180 + -0.2 953,180 + +0.3 953,188 - -1.9 953,251 + +0.2 953,251 + -0.4 953,265 - +0.0 953,280 + -0.2 953,412 - +0.2 953,439 - +1.6 953,472 - Atu3864 0.17 +0.7 953,515 + Atu3864 0.33 +1.1 953,515 + Atu3864 0.33 +1.0 953,595 - Atu3864 0.62 -0.2 953,595 - Atu3864 0.62 +0.4 953,674 - +1.1 953,709 - +0.5 953,709 - -1.1 953,711 + +0.4 953,752 + +0.3 953,752 + -2.0 953,774 - -0.3 953,788 - +2.7 953,808 - -0.2 953,859 + -0.7 953,909 - +1.4 953,914 - +0.0 953,914 - -0.1 953,978 - +0.1 954,006 + +0.3 954,009 + -0.5 954,017 - +0.6 954,058 + -0.1 954,140 - +0.0 954,168 - +2.1 954,284 - Atu3865 0.11 -0.1 954,320 + Atu3865 0.12 -0.1 954,320 + Atu3865 0.12 -0.7 954,328 - Atu3865 0.13 +0.5 954,408 + Atu3865 0.15 +0.3 954,524 + Atu3865 0.18 -0.9 954,608 - Atu3865 0.21 -0.8 954,641 + Atu3865 0.22 +0.1 954,644 - Atu3865 0.22 +0.1 954,649 - Atu3865 0.22 -2.0 954,649 - Atu3865 0.22 +1.4 954,649 - Atu3865 0.22 +0.3 954,654 - Atu3865 0.22 +1.2 954,685 - Atu3865 0.23 -1.6 954,685 - Atu3865 0.23 +0.3
Or see this region's nucleotide sequence