Experiment: Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3541 and Atu3542 are separated by 119 nucleotides Atu3542 and Atu3543 are separated by 14 nucleotides Atu3543 and Atu3544 are separated by 326 nucleotides
Atu3541: Atu3541 - hypothetical protein, at 589,442 to 590,044
Atu3541
Atu3542: Atu3542 - serine/threonine protein phosphatase I, at 590,164 to 590,955
Atu3542
Atu3543: Atu3543 - dihydroxyacetone kinase, at 590,970 to 592,664
Atu3543
Atu3544: Atu3544 - arsenical pump membrane protein, at 592,991 to 594,244
Atu3544
Position (kb) 590
591
592
593 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 590.009 kb on - strand at 590.081 kb on + strand at 590.089 kb on - strand at 590.095 kb on - strand at 590.104 kb on + strand at 590.112 kb on - strand at 590.126 kb on + strand at 590.127 kb on + strand at 590.127 kb on + strand at 590.135 kb on - strand at 590.173 kb on + strand at 590.229 kb on + strand at 590.234 kb on + strand at 590.234 kb on + strand at 590.234 kb on + strand at 590.929 kb on + strand at 590.935 kb on + strand at 590.943 kb on - strand at 591.110 kb on + strand at 591.245 kb on - strand, within Atu3543 at 591.293 kb on - strand, within Atu3543 at 591.359 kb on - strand, within Atu3543 at 591.448 kb on + strand, within Atu3543 at 591.520 kb on + strand, within Atu3543 at 591.537 kb on + strand, within Atu3543 at 591.537 kb on + strand, within Atu3543 at 591.545 kb on - strand, within Atu3543 at 591.545 kb on - strand, within Atu3543 at 591.674 kb on + strand, within Atu3543 at 591.774 kb on - strand, within Atu3543 at 591.797 kb on - strand, within Atu3543 at 591.802 kb on + strand, within Atu3543 at 591.827 kb on + strand, within Atu3543 at 591.833 kb on - strand, within Atu3543 at 592.130 kb on - strand, within Atu3543 at 592.143 kb on + strand, within Atu3543 at 592.234 kb on + strand, within Atu3543 at 592.234 kb on - strand, within Atu3543 at 592.242 kb on + strand, within Atu3543 at 592.339 kb on + strand, within Atu3543 at 592.384 kb on + strand, within Atu3543 at 592.395 kb on + strand, within Atu3543 at 592.503 kb on - strand at 592.515 kb on - strand at 592.525 kb on - strand at 592.554 kb on + strand at 592.562 kb on - strand at 592.631 kb on - strand at 592.631 kb on - strand at 592.673 kb on - strand at 592.681 kb on - strand at 592.691 kb on - strand at 592.746 kb on - strand at 592.746 kb on - strand at 592.809 kb on - strand at 592.813 kb on + strand at 592.816 kb on + strand at 592.818 kb on + strand at 592.824 kb on + strand at 592.834 kb on - strand at 592.851 kb on - strand at 592.869 kb on + strand at 592.894 kb on - strand at 592.904 kb on + strand at 593.000 kb on + strand at 593.050 kb on - strand at 593.096 kb on + strand at 593.104 kb on - strand at 593.119 kb on + strand, within Atu3544 at 593.149 kb on + strand, within Atu3544 at 593.149 kb on + strand, within Atu3544 at 593.157 kb on - strand, within Atu3544 at 593.157 kb on - strand, within Atu3544 at 593.157 kb on - strand, within Atu3544 at 593.173 kb on + strand, within Atu3544 at 593.181 kb on - strand, within Atu3544 at 593.192 kb on - strand, within Atu3544 at 593.196 kb on + strand, within Atu3544 at 593.259 kb on - strand, within Atu3544 at 593.270 kb on - strand, within Atu3544 at 593.297 kb on - strand, within Atu3544 at 593.411 kb on + strand, within Atu3544
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 590,009 - -0.7 590,081 + -0.0 590,089 - +0.1 590,095 - +0.1 590,104 + +0.2 590,112 - +1.3 590,126 + -0.0 590,127 + +0.4 590,127 + +0.4 590,135 - -1.3 590,173 + +0.5 590,229 + -0.2 590,234 + -1.7 590,234 + +0.5 590,234 + +0.1 590,929 + +0.7 590,935 + +0.4 590,943 - -0.5 591,110 + +0.0 591,245 - Atu3543 0.16 -0.2 591,293 - Atu3543 0.19 -0.0 591,359 - Atu3543 0.23 -0.9 591,448 + Atu3543 0.28 -0.4 591,520 + Atu3543 0.32 -0.6 591,537 + Atu3543 0.33 +0.3 591,537 + Atu3543 0.33 -0.2 591,545 - Atu3543 0.34 +0.0 591,545 - Atu3543 0.34 -0.2 591,674 + Atu3543 0.42 -0.7 591,774 - Atu3543 0.47 -0.5 591,797 - Atu3543 0.49 +0.3 591,802 + Atu3543 0.49 +0.6 591,827 + Atu3543 0.51 -0.2 591,833 - Atu3543 0.51 -0.1 592,130 - Atu3543 0.68 -1.5 592,143 + Atu3543 0.69 -0.1 592,234 + Atu3543 0.75 -0.1 592,234 - Atu3543 0.75 +0.0 592,242 + Atu3543 0.75 -0.1 592,339 + Atu3543 0.81 +0.5 592,384 + Atu3543 0.83 +0.8 592,395 + Atu3543 0.84 +0.1 592,503 - +0.7 592,515 - +1.3 592,525 - -0.1 592,554 + -0.1 592,562 - +0.3 592,631 - -0.2 592,631 - +1.4 592,673 - +0.2 592,681 - +0.1 592,691 - -0.4 592,746 - -1.4 592,746 - -0.5 592,809 - -0.3 592,813 + +0.4 592,816 + -0.2 592,818 + -0.5 592,824 + +0.3 592,834 - +0.1 592,851 - -1.1 592,869 + -0.2 592,894 - +0.9 592,904 + +2.0 593,000 + -3.3 593,050 - -0.7 593,096 + -2.8 593,104 - -4.9 593,119 + Atu3544 0.10 -4.5 593,149 + Atu3544 0.13 -0.7 593,149 + Atu3544 0.13 -6.1 593,157 - Atu3544 0.13 -3.2 593,157 - Atu3544 0.13 -2.9 593,157 - Atu3544 0.13 -2.9 593,173 + Atu3544 0.15 -6.2 593,181 - Atu3544 0.15 -1.8 593,192 - Atu3544 0.16 -3.3 593,196 + Atu3544 0.16 -6.3 593,259 - Atu3544 0.21 -3.1 593,270 - Atu3544 0.22 -5.1 593,297 - Atu3544 0.24 -3.0 593,411 + Atu3544 0.33 -5.2
Or see this region's nucleotide sequence