Strain Fitness in Agrobacterium fabrum C58 around Atu3320

Experiment: Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3318 and Atu3319 are separated by 270 nucleotidesAtu3319 and Atu3320 are separated by 385 nucleotidesAtu3320 and Atu3321 are separated by 148 nucleotides Atu3318: Atu3318 - LuxR family transcriptional regulator, at 349,345 to 350,115 Atu3318 Atu3319: Atu3319 - hypothetical protein, at 350,386 to 350,631 Atu3319 Atu3320: Atu3320 - fibrinogen binding protein, at 351,017 to 351,982 Atu3320 Atu3321: Atu3321 - hypothetical protein, at 352,131 to 354,152 Atu3321 Position (kb) 351 352Strain fitness (log2 ratio) -2 -1 0 1 2 3at 350.113 kb on - strandat 350.124 kb on + strandat 350.124 kb on + strandat 350.144 kb on + strandat 350.351 kb on - strandat 350.435 kb on + strand, within Atu3319at 350.456 kb on + strand, within Atu3319at 350.499 kb on + strand, within Atu3319at 350.507 kb on - strand, within Atu3319at 350.576 kb on - strand, within Atu3319at 350.634 kb on - strandat 350.716 kb on + strandat 350.791 kb on + strandat 350.829 kb on - strandat 350.844 kb on + strandat 350.844 kb on - strandat 350.852 kb on - strandat 350.852 kb on - strandat 350.871 kb on + strandat 350.879 kb on - strandat 350.879 kb on - strandat 350.937 kb on - strandat 350.937 kb on - strandat 350.942 kb on - strandat 351.027 kb on - strandat 351.110 kb on + strandat 351.118 kb on - strand, within Atu3320at 351.218 kb on - strand, within Atu3320at 351.265 kb on - strand, within Atu3320at 351.293 kb on - strand, within Atu3320at 351.325 kb on + strand, within Atu3320at 351.325 kb on + strand, within Atu3320at 351.325 kb on + strand, within Atu3320at 351.325 kb on + strand, within Atu3320at 351.325 kb on + strand, within Atu3320at 351.333 kb on - strand, within Atu3320at 351.409 kb on + strand, within Atu3320at 351.469 kb on - strand, within Atu3320at 351.503 kb on + strand, within Atu3320at 351.566 kb on + strand, within Atu3320at 351.566 kb on + strand, within Atu3320at 351.574 kb on - strand, within Atu3320at 351.581 kb on - strand, within Atu3320at 351.581 kb on - strand, within Atu3320at 351.584 kb on + strand, within Atu3320at 351.605 kb on - strand, within Atu3320at 351.659 kb on + strand, within Atu3320at 351.679 kb on - strand, within Atu3320at 351.742 kb on + strand, within Atu3320at 351.797 kb on + strand, within Atu3320at 351.830 kb on + strand, within Atu3320at 351.832 kb on + strand, within Atu3320at 351.838 kb on - strand, within Atu3320at 351.840 kb on - strand, within Atu3320at 351.850 kb on - strand, within Atu3320at 351.918 kb on - strandat 351.938 kb on + strandat 351.974 kb on - strandat 352.070 kb on + strandat 352.078 kb on - strandat 352.092 kb on + strandat 352.092 kb on + strandat 352.092 kb on + strandat 352.100 kb on - strandat 352.112 kb on - strandat 352.120 kb on - strandat 352.120 kb on - strandat 352.186 kb on - strandat 352.270 kb on + strandat 352.493 kb on + strand, within Atu3321at 352.527 kb on - strand, within Atu3321at 352.535 kb on + strand, within Atu3321at 352.543 kb on - strand, within Atu3321at 352.587 kb on - strand, within Atu3321at 352.619 kb on - strand, within Atu3321at 352.636 kb on - strand, within Atu3321at 352.714 kb on - strand, within Atu3321at 352.739 kb on - strand, within Atu3321at 352.815 kb on + strand, within Atu3321at 352.815 kb on + strand, within Atu3321at 352.939 kb on - strand, within Atu3321at 352.951 kb on + strand, within Atu3321at 352.951 kb on + strand, within Atu3321at 352.953 kb on + strand, within Atu3321at 352.959 kb on - strand, within Atu3321at 352.959 kb on - strand, within Atu3321

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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350,113 - -0.1
350,124 + +1.2
350,124 + -2.1
350,144 + -0.1
350,351 - +0.5
350,435 + Atu3319 0.20 +0.8
350,456 + Atu3319 0.28 +0.7
350,499 + Atu3319 0.46 +0.8
350,507 - Atu3319 0.49 +0.5
350,576 - Atu3319 0.77 +0.6
350,634 - -0.1
350,716 + +1.4
350,791 + -0.1
350,829 - -0.1
350,844 + +0.4
350,844 - +0.2
350,852 - +0.9
350,852 - -0.2
350,871 + +1.1
350,879 - +1.4
350,879 - -0.1
350,937 - -0.5
350,937 - +0.8
350,942 - +0.3
351,027 - +1.3
351,110 + +0.8
351,118 - Atu3320 0.10 -0.7
351,218 - Atu3320 0.21 -0.4
351,265 - Atu3320 0.26 -0.0
351,293 - Atu3320 0.29 +0.1
351,325 + Atu3320 0.32 -0.4
351,325 + Atu3320 0.32 +1.2
351,325 + Atu3320 0.32 -0.3
351,325 + Atu3320 0.32 -1.2
351,325 + Atu3320 0.32 -1.1
351,333 - Atu3320 0.33 -0.4
351,409 + Atu3320 0.41 -0.9
351,469 - Atu3320 0.47 -0.3
351,503 + Atu3320 0.50 -0.6
351,566 + Atu3320 0.57 +0.3
351,566 + Atu3320 0.57 -0.2
351,574 - Atu3320 0.58 -0.6
351,581 - Atu3320 0.58 -1.4
351,581 - Atu3320 0.58 -0.4
351,584 + Atu3320 0.59 +0.0
351,605 - Atu3320 0.61 -2.6
351,659 + Atu3320 0.66 -0.0
351,679 - Atu3320 0.69 -0.1
351,742 + Atu3320 0.75 +0.3
351,797 + Atu3320 0.81 +2.2
351,830 + Atu3320 0.84 +1.6
351,832 + Atu3320 0.84 +0.5
351,838 - Atu3320 0.85 -0.1
351,840 - Atu3320 0.85 +1.7
351,850 - Atu3320 0.86 -0.7
351,918 - +0.0
351,938 + -0.2
351,974 - +0.5
352,070 + -1.2
352,078 - +0.1
352,092 + -0.7
352,092 + -0.7
352,092 + -0.1
352,100 - +0.9
352,112 - +0.5
352,120 - -0.3
352,120 - +0.5
352,186 - +0.7
352,270 + -0.7
352,493 + Atu3321 0.18 -0.0
352,527 - Atu3321 0.20 +0.1
352,535 + Atu3321 0.20 +0.4
352,543 - Atu3321 0.20 -0.3
352,587 - Atu3321 0.23 -0.2
352,619 - Atu3321 0.24 +0.4
352,636 - Atu3321 0.25 -0.4
352,714 - Atu3321 0.29 -0.7
352,739 - Atu3321 0.30 +0.2
352,815 + Atu3321 0.34 -0.1
352,815 + Atu3321 0.34 -0.1
352,939 - Atu3321 0.40 +0.0
352,951 + Atu3321 0.41 +3.3
352,951 + Atu3321 0.41 -1.6
352,953 + Atu3321 0.41 +0.9
352,959 - Atu3321 0.41 -0.7
352,959 - Atu3321 0.41 -0.2

Or see this region's nucleotide sequence