Experiment: Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3612 and Atu3613 are separated by 84 nucleotides Atu3613 and Atu3614 are separated by 119 nucleotides Atu3614 and Atu3615 are separated by 11 nucleotides Atu3615 and Atu3616 are separated by 108 nucleotides
Atu3612: Atu3612 - histidinol-phosphate aminotransferase, at 667,554 to 668,660
Atu3612
Atu3613: Atu3613 - hypothetical protein, at 668,745 to 669,506
Atu3613
Atu3614: Atu3614 - glyoxalase II, at 669,626 to 670,396
Atu3614
Atu3615: Atu3615 - hypothetical protein, at 670,408 to 670,836
Atu3615
Atu3616: Atu3616 - hypothetical protein, at 670,945 to 671,718
Atu3616
Position (kb) 669
670
671 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 668.839 kb on + strand, within Atu3613 at 668.882 kb on + strand, within Atu3613 at 669.036 kb on - strand, within Atu3613 at 669.046 kb on - strand, within Atu3613 at 669.061 kb on + strand, within Atu3613 at 669.087 kb on + strand, within Atu3613 at 669.089 kb on + strand, within Atu3613 at 669.113 kb on - strand, within Atu3613 at 669.205 kb on + strand, within Atu3613 at 669.370 kb on + strand, within Atu3613 at 669.370 kb on + strand, within Atu3613 at 669.376 kb on - strand, within Atu3613 at 669.378 kb on - strand, within Atu3613 at 669.378 kb on - strand, within Atu3613 at 669.692 kb on + strand at 669.740 kb on + strand, within Atu3614 at 669.743 kb on - strand, within Atu3614 at 669.743 kb on - strand, within Atu3614 at 669.743 kb on - strand, within Atu3614 at 669.743 kb on - strand, within Atu3614 at 669.750 kb on + strand, within Atu3614 at 669.777 kb on + strand, within Atu3614 at 669.792 kb on + strand, within Atu3614 at 669.808 kb on - strand, within Atu3614 at 669.818 kb on - strand, within Atu3614 at 669.854 kb on + strand, within Atu3614 at 669.862 kb on - strand, within Atu3614 at 669.886 kb on + strand, within Atu3614 at 669.977 kb on + strand, within Atu3614 at 670.007 kb on + strand, within Atu3614 at 670.081 kb on + strand, within Atu3614 at 670.089 kb on - strand, within Atu3614 at 670.126 kb on + strand, within Atu3614 at 670.126 kb on + strand, within Atu3614 at 670.186 kb on + strand, within Atu3614 at 670.194 kb on - strand, within Atu3614 at 670.199 kb on - strand, within Atu3614 at 670.199 kb on - strand, within Atu3614 at 670.219 kb on + strand, within Atu3614 at 670.439 kb on + strand at 670.601 kb on - strand, within Atu3615 at 670.637 kb on + strand, within Atu3615 at 670.637 kb on + strand, within Atu3615 at 670.645 kb on + strand, within Atu3615 at 670.645 kb on - strand, within Atu3615 at 670.645 kb on - strand, within Atu3615 at 670.652 kb on + strand, within Atu3615 at 670.653 kb on - strand, within Atu3615 at 670.653 kb on - strand, within Atu3615 at 670.660 kb on - strand, within Atu3615 at 670.660 kb on - strand, within Atu3615 at 670.838 kb on + strand at 670.856 kb on - strand at 670.978 kb on - strand at 670.979 kb on + strand at 671.292 kb on - strand, within Atu3616 at 671.338 kb on + strand, within Atu3616 at 671.341 kb on - strand, within Atu3616 at 671.346 kb on - strand, within Atu3616 at 671.346 kb on - strand, within Atu3616 at 671.394 kb on + strand, within Atu3616
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 668,839 + Atu3613 0.12 +0.3 668,882 + Atu3613 0.18 -2.6 669,036 - Atu3613 0.38 -2.0 669,046 - Atu3613 0.40 -1.5 669,061 + Atu3613 0.41 -0.1 669,087 + Atu3613 0.45 +0.3 669,089 + Atu3613 0.45 -1.7 669,113 - Atu3613 0.48 +0.3 669,205 + Atu3613 0.60 -0.5 669,370 + Atu3613 0.82 -0.2 669,370 + Atu3613 0.82 -0.9 669,376 - Atu3613 0.83 +0.8 669,378 - Atu3613 0.83 +0.8 669,378 - Atu3613 0.83 -1.0 669,692 + +0.4 669,740 + Atu3614 0.15 +1.5 669,743 - Atu3614 0.15 +0.2 669,743 - Atu3614 0.15 +0.0 669,743 - Atu3614 0.15 +1.1 669,743 - Atu3614 0.15 +0.9 669,750 + Atu3614 0.16 +0.6 669,777 + Atu3614 0.20 +5.8 669,792 + Atu3614 0.22 +0.8 669,808 - Atu3614 0.24 -0.3 669,818 - Atu3614 0.25 +1.2 669,854 + Atu3614 0.30 +0.8 669,862 - Atu3614 0.31 +0.8 669,886 + Atu3614 0.34 -0.3 669,977 + Atu3614 0.46 +1.3 670,007 + Atu3614 0.49 +1.2 670,081 + Atu3614 0.59 +0.5 670,089 - Atu3614 0.60 +0.9 670,126 + Atu3614 0.65 +1.6 670,126 + Atu3614 0.65 +1.5 670,186 + Atu3614 0.73 +0.6 670,194 - Atu3614 0.74 +0.1 670,199 - Atu3614 0.74 +0.6 670,199 - Atu3614 0.74 -0.6 670,219 + Atu3614 0.77 +0.7 670,439 + +0.1 670,601 - Atu3615 0.45 -1.7 670,637 + Atu3615 0.53 -0.3 670,637 + Atu3615 0.53 +0.3 670,645 + Atu3615 0.55 +0.8 670,645 - Atu3615 0.55 +0.9 670,645 - Atu3615 0.55 +0.4 670,652 + Atu3615 0.57 +0.2 670,653 - Atu3615 0.57 +0.3 670,653 - Atu3615 0.57 +0.4 670,660 - Atu3615 0.59 -1.5 670,660 - Atu3615 0.59 +0.3 670,838 + +1.0 670,856 - +0.4 670,978 - -0.1 670,979 + +0.1 671,292 - Atu3616 0.45 +0.6 671,338 + Atu3616 0.51 -0.5 671,341 - Atu3616 0.51 +0.5 671,346 - Atu3616 0.52 -0.1 671,346 - Atu3616 0.52 -0.7 671,394 + Atu3616 0.58 -0.1
Or see this region's nucleotide sequence