Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5191 and Atu5192 are separated by 369 nucleotides Atu5192 and Atu5193 are separated by 219 nucleotides
Atu5191: Atu5191 - hypothetical protein, at 186,410 to 187,534
Atu5191
Atu5192: Atu5192 - hypothetical protein, at 187,904 to 188,209
Atu5192
Atu5193: Atu5193 - peptidase, at 188,429 to 190,330
Atu5193
Position (kb) 187
188
189 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 186.974 kb on + strand, within Atu5191 at 186.995 kb on + strand, within Atu5191 at 187.096 kb on - strand, within Atu5191 at 187.098 kb on - strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on - strand, within Atu5191 at 187.174 kb on - strand, within Atu5191 at 187.181 kb on + strand, within Atu5191 at 187.264 kb on - strand, within Atu5191 at 187.264 kb on - strand, within Atu5191 at 187.479 kb on - strand at 187.602 kb on - strand at 187.632 kb on + strand at 187.679 kb on - strand at 187.756 kb on + strand at 187.819 kb on - strand at 187.831 kb on + strand at 187.839 kb on - strand at 187.886 kb on - strand at 187.904 kb on - strand at 187.923 kb on + strand at 187.931 kb on - strand at 187.964 kb on + strand, within Atu5192 at 187.992 kb on - strand, within Atu5192 at 187.999 kb on + strand, within Atu5192 at 187.999 kb on - strand, within Atu5192 at 188.004 kb on - strand, within Atu5192 at 188.007 kb on - strand, within Atu5192 at 188.040 kb on - strand, within Atu5192 at 188.110 kb on + strand, within Atu5192 at 188.116 kb on - strand, within Atu5192 at 188.134 kb on + strand, within Atu5192 at 188.134 kb on + strand, within Atu5192 at 188.141 kb on - strand, within Atu5192 at 188.142 kb on - strand, within Atu5192 at 188.142 kb on - strand, within Atu5192 at 188.174 kb on - strand, within Atu5192 at 188.218 kb on + strand at 188.273 kb on - strand at 188.428 kb on - strand at 188.431 kb on + strand at 188.436 kb on + strand at 188.669 kb on + strand, within Atu5193 at 188.700 kb on + strand, within Atu5193 at 188.710 kb on + strand, within Atu5193 at 188.716 kb on + strand, within Atu5193 at 188.737 kb on + strand, within Atu5193 at 188.737 kb on + strand, within Atu5193 at 188.737 kb on + strand, within Atu5193 at 188.737 kb on + strand, within Atu5193 at 188.737 kb on + strand, within Atu5193 at 188.737 kb on + strand, within Atu5193 at 188.745 kb on - strand, within Atu5193 at 188.745 kb on - strand, within Atu5193 at 188.745 kb on - strand, within Atu5193 at 188.745 kb on - strand, within Atu5193 at 188.745 kb on - strand, within Atu5193 at 188.783 kb on + strand, within Atu5193 at 188.791 kb on - strand, within Atu5193 at 188.797 kb on - strand, within Atu5193 at 188.833 kb on + strand, within Atu5193 at 188.941 kb on + strand, within Atu5193 at 188.951 kb on + strand, within Atu5193 at 188.981 kb on - strand, within Atu5193 at 189.072 kb on + strand, within Atu5193 at 189.091 kb on - strand, within Atu5193 at 189.149 kb on - strand, within Atu5193 at 189.163 kb on + strand, within Atu5193 at 189.163 kb on + strand, within Atu5193 at 189.163 kb on + strand, within Atu5193 at 189.171 kb on - strand, within Atu5193 at 189.171 kb on - strand, within Atu5193 at 189.173 kb on + strand, within Atu5193
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 186,974 + Atu5191 0.50 -1.1 186,995 + Atu5191 0.52 +1.2 187,096 - Atu5191 0.61 +0.1 187,098 - Atu5191 0.61 +0.0 187,164 + Atu5191 0.67 +0.4 187,164 + Atu5191 0.67 +0.4 187,164 + Atu5191 0.67 +0.1 187,164 - Atu5191 0.67 -0.4 187,174 - Atu5191 0.68 -0.6 187,181 + Atu5191 0.69 +0.2 187,264 - Atu5191 0.76 +0.4 187,264 - Atu5191 0.76 +0.0 187,479 - -0.1 187,602 - -0.2 187,632 + +0.1 187,679 - -0.1 187,756 + -0.3 187,819 - +0.9 187,831 + -0.2 187,839 - +0.1 187,886 - +0.0 187,904 - +0.3 187,923 + +0.3 187,931 - -0.8 187,964 + Atu5192 0.20 +0.3 187,992 - Atu5192 0.29 +0.1 187,999 + Atu5192 0.31 +2.3 187,999 - Atu5192 0.31 +1.1 188,004 - Atu5192 0.33 -0.1 188,007 - Atu5192 0.34 +0.3 188,040 - Atu5192 0.44 +1.0 188,110 + Atu5192 0.67 +0.1 188,116 - Atu5192 0.69 +0.1 188,134 + Atu5192 0.75 -0.1 188,134 + Atu5192 0.75 +0.0 188,141 - Atu5192 0.77 +0.4 188,142 - Atu5192 0.78 -0.0 188,142 - Atu5192 0.78 +0.3 188,174 - Atu5192 0.88 -1.4 188,218 + -0.1 188,273 - -3.8 188,428 - -1.2 188,431 + +0.4 188,436 + +0.0 188,669 + Atu5193 0.13 -1.2 188,700 + Atu5193 0.14 +0.1 188,710 + Atu5193 0.15 -1.0 188,716 + Atu5193 0.15 -0.0 188,737 + Atu5193 0.16 +0.5 188,737 + Atu5193 0.16 -2.7 188,737 + Atu5193 0.16 -0.3 188,737 + Atu5193 0.16 -0.1 188,737 + Atu5193 0.16 -0.4 188,737 + Atu5193 0.16 +0.1 188,745 - Atu5193 0.17 -0.3 188,745 - Atu5193 0.17 -1.2 188,745 - Atu5193 0.17 +1.0 188,745 - Atu5193 0.17 +0.9 188,745 - Atu5193 0.17 +0.2 188,783 + Atu5193 0.19 +0.1 188,791 - Atu5193 0.19 +0.2 188,797 - Atu5193 0.19 -1.4 188,833 + Atu5193 0.21 -1.5 188,941 + Atu5193 0.27 +1.2 188,951 + Atu5193 0.27 +0.3 188,981 - Atu5193 0.29 -0.5 189,072 + Atu5193 0.34 -0.3 189,091 - Atu5193 0.35 -0.3 189,149 - Atu5193 0.38 +0.1 189,163 + Atu5193 0.39 +0.7 189,163 + Atu5193 0.39 +0.3 189,163 + Atu5193 0.39 -3.0 189,171 - Atu5193 0.39 +0.6 189,171 - Atu5193 0.39 -0.2 189,173 + Atu5193 0.39 +1.7
Or see this region's nucleotide sequence