Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3307 and Atu3308 overlap by 4 nucleotides Atu3308 and Atu3309 overlap by 4 nucleotides
Atu3307: Atu3307 - endoglucanase, at 334,719 to 335,774
Atu3307
Atu3308: Atu3308 - celB protein, at 335,771 to 338,254
Atu3308
Atu3309: Atu3309 - cellulose synthase, at 338,251 to 340,440
Atu3309
Position (kb) 335
336
337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 334.876 kb on + strand, within Atu3307 at 334.916 kb on - strand, within Atu3307 at 335.078 kb on + strand, within Atu3307 at 335.078 kb on + strand, within Atu3307 at 335.122 kb on + strand, within Atu3307 at 335.140 kb on - strand, within Atu3307 at 335.353 kb on + strand, within Atu3307 at 335.416 kb on - strand, within Atu3307 at 335.470 kb on - strand, within Atu3307 at 335.583 kb on - strand, within Atu3307 at 335.583 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.673 kb on - strand at 335.673 kb on - strand at 335.805 kb on - strand at 335.863 kb on + strand at 335.931 kb on + strand at 335.939 kb on - strand at 335.939 kb on - strand at 335.955 kb on + strand at 336.052 kb on + strand, within Atu3308 at 336.153 kb on - strand, within Atu3308 at 336.155 kb on - strand, within Atu3308 at 336.160 kb on - strand, within Atu3308 at 336.176 kb on + strand, within Atu3308 at 336.469 kb on - strand, within Atu3308 at 336.488 kb on - strand, within Atu3308 at 336.590 kb on - strand, within Atu3308 at 336.651 kb on + strand, within Atu3308 at 336.661 kb on + strand, within Atu3308 at 336.669 kb on - strand, within Atu3308 at 336.669 kb on - strand, within Atu3308 at 336.717 kb on + strand, within Atu3308 at 336.733 kb on + strand, within Atu3308 at 336.759 kb on + strand, within Atu3308 at 336.840 kb on - strand, within Atu3308 at 336.840 kb on - strand, within Atu3308 at 336.842 kb on + strand, within Atu3308 at 336.916 kb on - strand, within Atu3308 at 337.105 kb on + strand, within Atu3308 at 337.222 kb on - strand, within Atu3308 at 337.257 kb on + strand, within Atu3308 at 337.308 kb on - strand, within Atu3308 at 337.471 kb on + strand, within Atu3308 at 337.581 kb on - strand, within Atu3308 at 337.602 kb on + strand, within Atu3308 at 337.704 kb on - strand, within Atu3308 at 337.709 kb on - strand, within Atu3308 at 337.733 kb on + strand, within Atu3308 at 337.788 kb on - strand, within Atu3308 at 337.879 kb on + strand, within Atu3308 at 337.894 kb on + strand, within Atu3308 at 337.897 kb on - strand, within Atu3308 at 337.902 kb on - strand, within Atu3308 at 337.948 kb on + strand, within Atu3308 at 338.059 kb on + strand at 338.080 kb on - strand at 338.180 kb on - strand at 338.210 kb on + strand at 338.210 kb on + strand at 338.218 kb on - strand at 338.218 kb on - strand at 338.239 kb on - strand at 338.239 kb on - strand at 338.262 kb on - strand at 338.330 kb on + strand at 338.353 kb on + strand at 338.434 kb on + strand at 338.567 kb on + strand, within Atu3309 at 338.705 kb on - strand, within Atu3309 at 338.738 kb on + strand, within Atu3309 at 338.807 kb on + strand, within Atu3309 at 338.944 kb on + strand, within Atu3309 at 338.993 kb on - strand, within Atu3309 at 339.018 kb on + strand, within Atu3309 at 339.018 kb on + strand, within Atu3309 at 339.030 kb on + strand, within Atu3309 at 339.108 kb on + strand, within Atu3309 at 339.109 kb on + strand, within Atu3309 at 339.117 kb on - strand, within Atu3309 at 339.117 kb on - strand, within Atu3309 at 339.127 kb on - strand, within Atu3309 at 339.188 kb on + strand, within Atu3309 at 339.204 kb on - strand, within Atu3309 at 339.224 kb on + strand, within Atu3309 at 339.224 kb on + strand, within Atu3309 at 339.224 kb on + strand, within Atu3309 at 339.232 kb on - strand, within Atu3309 at 339.232 kb on - strand, within Atu3309 at 339.245 kb on + strand, within Atu3309
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 334,876 + Atu3307 0.15 -2.8 334,916 - Atu3307 0.19 +0.0 335,078 + Atu3307 0.34 +1.6 335,078 + Atu3307 0.34 -0.0 335,122 + Atu3307 0.38 +1.1 335,140 - Atu3307 0.40 +1.6 335,353 + Atu3307 0.60 +0.8 335,416 - Atu3307 0.66 -0.2 335,470 - Atu3307 0.71 +0.9 335,583 - Atu3307 0.82 +0.0 335,583 - Atu3307 0.82 -1.7 335,588 - Atu3307 0.82 +0.1 335,588 - Atu3307 0.82 -0.2 335,588 - Atu3307 0.82 -1.0 335,673 - +0.4 335,673 - +0.1 335,805 - +2.6 335,863 + +0.2 335,931 + -0.1 335,939 - +0.1 335,939 - +0.6 335,955 + -1.9 336,052 + Atu3308 0.11 -2.0 336,153 - Atu3308 0.15 -0.7 336,155 - Atu3308 0.15 +0.0 336,160 - Atu3308 0.16 +0.1 336,176 + Atu3308 0.16 +0.7 336,469 - Atu3308 0.28 -0.4 336,488 - Atu3308 0.29 -0.2 336,590 - Atu3308 0.33 -0.2 336,651 + Atu3308 0.35 -0.2 336,661 + Atu3308 0.36 +1.1 336,669 - Atu3308 0.36 -2.0 336,669 - Atu3308 0.36 +0.9 336,717 + Atu3308 0.38 -0.3 336,733 + Atu3308 0.39 -1.9 336,759 + Atu3308 0.40 -1.3 336,840 - Atu3308 0.43 +1.4 336,840 - Atu3308 0.43 +0.1 336,842 + Atu3308 0.43 +0.7 336,916 - Atu3308 0.46 -0.6 337,105 + Atu3308 0.54 +0.8 337,222 - Atu3308 0.58 +1.2 337,257 + Atu3308 0.60 +1.6 337,308 - Atu3308 0.62 -0.9 337,471 + Atu3308 0.68 -0.4 337,581 - Atu3308 0.73 +0.7 337,602 + Atu3308 0.74 +0.5 337,704 - Atu3308 0.78 +0.7 337,709 - Atu3308 0.78 -2.0 337,733 + Atu3308 0.79 +2.0 337,788 - Atu3308 0.81 -0.2 337,879 + Atu3308 0.85 -1.3 337,894 + Atu3308 0.85 -0.0 337,897 - Atu3308 0.86 -0.7 337,902 - Atu3308 0.86 +0.1 337,948 + Atu3308 0.88 -0.5 338,059 + +0.2 338,080 - +0.3 338,180 - -1.9 338,210 + -0.3 338,210 + +0.2 338,218 - +0.8 338,218 - -0.4 338,239 - -0.4 338,239 - -0.4 338,262 - -0.8 338,330 + -0.2 338,353 + -2.1 338,434 + -0.4 338,567 + Atu3309 0.14 -0.2 338,705 - Atu3309 0.21 +0.9 338,738 + Atu3309 0.22 -1.6 338,807 + Atu3309 0.25 +1.2 338,944 + Atu3309 0.32 +0.1 338,993 - Atu3309 0.34 -0.7 339,018 + Atu3309 0.35 +0.2 339,018 + Atu3309 0.35 -2.0 339,030 + Atu3309 0.36 -0.3 339,108 + Atu3309 0.39 -0.2 339,109 + Atu3309 0.39 +0.5 339,117 - Atu3309 0.40 -0.2 339,117 - Atu3309 0.40 +1.0 339,127 - Atu3309 0.40 +0.1 339,188 + Atu3309 0.43 +0.5 339,204 - Atu3309 0.44 +1.2 339,224 + Atu3309 0.44 +0.3 339,224 + Atu3309 0.44 +0.6 339,224 + Atu3309 0.44 -0.6 339,232 - Atu3309 0.45 +0.5 339,232 - Atu3309 0.45 -1.1 339,245 + Atu3309 0.45 -0.4
Or see this region's nucleotide sequence