Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3280 and Atu3281 are separated by 334 nucleotides Atu3281 and Atu3282 are separated by 51 nucleotides
Atu3280: Atu3280 - GntR family transcriptional regulator, at 305,181 to 305,885
Atu3280
Atu3281: Atu3281 - ABC transporter permease, at 306,220 to 307,296
Atu3281
Atu3282: Atu3282 - sugar ABC transporter substrate-binding protein, at 307,348 to 308,598
Atu3282
Position (kb) 306
307
308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 305.304 kb on + strand, within Atu3280 at 305.304 kb on + strand, within Atu3280 at 305.438 kb on - strand, within Atu3280 at 305.440 kb on + strand, within Atu3280 at 305.448 kb on - strand, within Atu3280 at 305.656 kb on + strand, within Atu3280 at 305.770 kb on + strand, within Atu3280 at 305.773 kb on + strand, within Atu3280 at 305.773 kb on + strand, within Atu3280 at 305.813 kb on - strand, within Atu3280 at 305.813 kb on - strand, within Atu3280 at 305.951 kb on - strand at 306.153 kb on + strand at 306.153 kb on + strand at 306.167 kb on - strand at 306.178 kb on - strand at 306.200 kb on + strand at 306.252 kb on + strand at 306.252 kb on + strand at 306.281 kb on - strand at 306.321 kb on + strand at 306.483 kb on + strand, within Atu3281 at 306.523 kb on - strand, within Atu3281 at 306.523 kb on - strand, within Atu3281 at 306.541 kb on + strand, within Atu3281 at 306.598 kb on - strand, within Atu3281 at 306.659 kb on + strand, within Atu3281 at 306.710 kb on - strand, within Atu3281 at 306.799 kb on - strand, within Atu3281 at 306.801 kb on + strand, within Atu3281 at 306.809 kb on - strand, within Atu3281 at 306.830 kb on + strand, within Atu3281 at 306.861 kb on + strand, within Atu3281 at 306.861 kb on + strand, within Atu3281 at 306.869 kb on - strand, within Atu3281 at 306.869 kb on - strand, within Atu3281 at 306.869 kb on - strand, within Atu3281 at 306.869 kb on - strand, within Atu3281 at 306.888 kb on - strand, within Atu3281 at 306.888 kb on - strand, within Atu3281 at 307.090 kb on + strand, within Atu3281 at 307.122 kb on + strand, within Atu3281 at 307.146 kb on - strand, within Atu3281 at 307.190 kb on - strand at 307.203 kb on + strand at 307.238 kb on + strand at 307.393 kb on - strand at 307.405 kb on - strand at 307.523 kb on + strand, within Atu3282 at 307.546 kb on + strand, within Atu3282 at 307.587 kb on - strand, within Atu3282 at 307.790 kb on + strand, within Atu3282 at 307.803 kb on - strand, within Atu3282 at 307.840 kb on + strand, within Atu3282 at 307.850 kb on - strand, within Atu3282 at 307.852 kb on + strand, within Atu3282 at 307.864 kb on + strand, within Atu3282 at 307.933 kb on + strand, within Atu3282 at 308.009 kb on + strand, within Atu3282 at 308.196 kb on + strand, within Atu3282 at 308.196 kb on + strand, within Atu3282 at 308.198 kb on - strand, within Atu3282 at 308.292 kb on + strand, within Atu3282
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 305,304 + Atu3280 0.17 -0.8 305,304 + Atu3280 0.17 -1.8 305,438 - Atu3280 0.36 -0.3 305,440 + Atu3280 0.37 -0.6 305,448 - Atu3280 0.38 +0.6 305,656 + Atu3280 0.67 +0.3 305,770 + Atu3280 0.84 -2.4 305,773 + Atu3280 0.84 -0.3 305,773 + Atu3280 0.84 -0.9 305,813 - Atu3280 0.90 -0.9 305,813 - Atu3280 0.90 -1.2 305,951 - -0.6 306,153 + +2.1 306,153 + +0.8 306,167 - +0.2 306,178 - +0.2 306,200 + -2.6 306,252 + -0.9 306,252 + +0.3 306,281 - +0.5 306,321 + -1.0 306,483 + Atu3281 0.24 -0.5 306,523 - Atu3281 0.28 +1.1 306,523 - Atu3281 0.28 +0.1 306,541 + Atu3281 0.30 +0.8 306,598 - Atu3281 0.35 +0.3 306,659 + Atu3281 0.41 +0.1 306,710 - Atu3281 0.45 -0.2 306,799 - Atu3281 0.54 -1.0 306,801 + Atu3281 0.54 +0.7 306,809 - Atu3281 0.55 -0.4 306,830 + Atu3281 0.57 -1.6 306,861 + Atu3281 0.60 +1.2 306,861 + Atu3281 0.60 -0.9 306,869 - Atu3281 0.60 +0.1 306,869 - Atu3281 0.60 +1.0 306,869 - Atu3281 0.60 +0.8 306,869 - Atu3281 0.60 +0.3 306,888 - Atu3281 0.62 +0.0 306,888 - Atu3281 0.62 -0.9 307,090 + Atu3281 0.81 -0.5 307,122 + Atu3281 0.84 +0.3 307,146 - Atu3281 0.86 -2.1 307,190 - -3.0 307,203 + -1.6 307,238 + -0.3 307,393 - +0.5 307,405 - -0.8 307,523 + Atu3282 0.14 +0.1 307,546 + Atu3282 0.16 +0.3 307,587 - Atu3282 0.19 +0.5 307,790 + Atu3282 0.35 +0.4 307,803 - Atu3282 0.36 +0.1 307,840 + Atu3282 0.39 +1.1 307,850 - Atu3282 0.40 +1.6 307,852 + Atu3282 0.40 -0.3 307,864 + Atu3282 0.41 -0.1 307,933 + Atu3282 0.47 +0.7 308,009 + Atu3282 0.53 -0.2 308,196 + Atu3282 0.68 -0.5 308,196 + Atu3282 0.68 +0.1 308,198 - Atu3282 0.68 -0.2 308,292 + Atu3282 0.75 -0.1
Or see this region's nucleotide sequence