Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2358 and Atu2359 are separated by 34 nucleotides Atu2359 and Atu2360 are separated by 160 nucleotides
Atu2358: Atu2358 - acetyltransferase, at 2,332,208 to 2,333,191
Atu2358
Atu2359: Atu2359 - hypothetical protein, at 2,333,226 to 2,333,630
Atu2359
Atu2360: Atu2360 - methyl-accepting chemotaxis protein, at 2,333,791 to 2,335,740
Atu2360
Position (kb)
2333
2334 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2332.239 kb on - strand at 2332.239 kb on - strand at 2332.252 kb on + strand at 2332.260 kb on - strand at 2332.329 kb on + strand, within Atu2358 at 2332.379 kb on + strand, within Atu2358 at 2332.404 kb on - strand, within Atu2358 at 2332.409 kb on + strand, within Atu2358 at 2332.414 kb on + strand, within Atu2358 at 2332.414 kb on + strand, within Atu2358 at 2332.422 kb on - strand, within Atu2358 at 2332.422 kb on - strand, within Atu2358 at 2332.422 kb on - strand, within Atu2358 at 2332.422 kb on - strand, within Atu2358 at 2332.422 kb on - strand, within Atu2358 at 2332.422 kb on - strand, within Atu2358 at 2332.478 kb on - strand, within Atu2358 at 2332.498 kb on - strand, within Atu2358 at 2332.544 kb on + strand, within Atu2358 at 2332.552 kb on + strand, within Atu2358 at 2332.619 kb on - strand, within Atu2358 at 2332.619 kb on - strand, within Atu2358 at 2332.641 kb on - strand, within Atu2358 at 2332.658 kb on + strand, within Atu2358 at 2332.671 kb on - strand, within Atu2358 at 2332.686 kb on - strand, within Atu2358 at 2332.746 kb on + strand, within Atu2358 at 2332.759 kb on - strand, within Atu2358 at 2332.768 kb on + strand, within Atu2358 at 2332.832 kb on + strand, within Atu2358 at 2332.837 kb on + strand, within Atu2358 at 2332.905 kb on + strand, within Atu2358 at 2332.978 kb on + strand, within Atu2358 at 2332.986 kb on + strand, within Atu2358 at 2333.037 kb on - strand, within Atu2358 at 2333.163 kb on + strand at 2333.251 kb on + strand at 2333.298 kb on + strand, within Atu2359 at 2333.331 kb on + strand, within Atu2359 at 2333.331 kb on + strand, within Atu2359 at 2333.331 kb on + strand, within Atu2359 at 2333.339 kb on - strand, within Atu2359 at 2333.339 kb on - strand, within Atu2359 at 2333.339 kb on - strand, within Atu2359 at 2333.356 kb on - strand, within Atu2359 at 2333.376 kb on - strand, within Atu2359 at 2333.392 kb on - strand, within Atu2359 at 2333.431 kb on + strand, within Atu2359 at 2333.434 kb on - strand, within Atu2359 at 2333.443 kb on + strand, within Atu2359 at 2333.443 kb on + strand, within Atu2359 at 2333.538 kb on - strand, within Atu2359 at 2333.538 kb on - strand, within Atu2359 at 2333.538 kb on - strand, within Atu2359 at 2333.573 kb on - strand, within Atu2359 at 2333.678 kb on + strand at 2333.678 kb on + strand at 2333.703 kb on - strand at 2333.724 kb on - strand at 2333.724 kb on - strand at 2333.741 kb on - strand at 2333.750 kb on + strand at 2333.810 kb on + strand at 2333.810 kb on + strand at 2333.816 kb on + strand at 2333.824 kb on - strand at 2333.927 kb on + strand at 2333.951 kb on + strand at 2333.951 kb on + strand at 2333.951 kb on + strand at 2333.959 kb on - strand at 2333.968 kb on - strand at 2334.061 kb on + strand, within Atu2360 at 2334.118 kb on - strand, within Atu2360 at 2334.173 kb on - strand, within Atu2360 at 2334.242 kb on + strand, within Atu2360 at 2334.254 kb on + strand, within Atu2360 at 2334.288 kb on + strand, within Atu2360 at 2334.475 kb on + strand, within Atu2360 at 2334.475 kb on + strand, within Atu2360 at 2334.483 kb on - strand, within Atu2360 at 2334.488 kb on - strand, within Atu2360 at 2334.551 kb on + strand, within Atu2360 at 2334.559 kb on - strand, within Atu2360
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 2,332,239 - +0.3 2,332,239 - +1.6 2,332,252 + +0.4 2,332,260 - -1.2 2,332,329 + Atu2358 0.12 -0.6 2,332,379 + Atu2358 0.17 -0.5 2,332,404 - Atu2358 0.20 -0.1 2,332,409 + Atu2358 0.20 -0.3 2,332,414 + Atu2358 0.21 +0.1 2,332,414 + Atu2358 0.21 -0.6 2,332,422 - Atu2358 0.22 -0.0 2,332,422 - Atu2358 0.22 +0.6 2,332,422 - Atu2358 0.22 -0.1 2,332,422 - Atu2358 0.22 +0.1 2,332,422 - Atu2358 0.22 -1.1 2,332,422 - Atu2358 0.22 -0.1 2,332,478 - Atu2358 0.27 +0.0 2,332,498 - Atu2358 0.29 +0.7 2,332,544 + Atu2358 0.34 +0.2 2,332,552 + Atu2358 0.35 -0.1 2,332,619 - Atu2358 0.42 -0.6 2,332,619 - Atu2358 0.42 +0.5 2,332,641 - Atu2358 0.44 +0.1 2,332,658 + Atu2358 0.46 +0.3 2,332,671 - Atu2358 0.47 -0.3 2,332,686 - Atu2358 0.49 -0.1 2,332,746 + Atu2358 0.55 +0.6 2,332,759 - Atu2358 0.56 +0.2 2,332,768 + Atu2358 0.57 -0.5 2,332,832 + Atu2358 0.63 +2.0 2,332,837 + Atu2358 0.64 +0.2 2,332,905 + Atu2358 0.71 -0.8 2,332,978 + Atu2358 0.78 +0.7 2,332,986 + Atu2358 0.79 -1.0 2,333,037 - Atu2358 0.84 -0.1 2,333,163 + +0.2 2,333,251 + +0.7 2,333,298 + Atu2359 0.18 +1.0 2,333,331 + Atu2359 0.26 +0.1 2,333,331 + Atu2359 0.26 +0.8 2,333,331 + Atu2359 0.26 +0.2 2,333,339 - Atu2359 0.28 +0.3 2,333,339 - Atu2359 0.28 +0.7 2,333,339 - Atu2359 0.28 +0.5 2,333,356 - Atu2359 0.32 +0.7 2,333,376 - Atu2359 0.37 +0.4 2,333,392 - Atu2359 0.41 -0.4 2,333,431 + Atu2359 0.51 +0.6 2,333,434 - Atu2359 0.51 +0.3 2,333,443 + Atu2359 0.54 +0.0 2,333,443 + Atu2359 0.54 +0.7 2,333,538 - Atu2359 0.77 +1.0 2,333,538 - Atu2359 0.77 -2.2 2,333,538 - Atu2359 0.77 +0.5 2,333,573 - Atu2359 0.86 +0.3 2,333,678 + -0.1 2,333,678 + -0.2 2,333,703 - -0.7 2,333,724 - +0.4 2,333,724 - -0.5 2,333,741 - -0.3 2,333,750 + -0.2 2,333,810 + -0.0 2,333,810 + +0.1 2,333,816 + +0.6 2,333,824 - -1.0 2,333,927 + -0.1 2,333,951 + -0.0 2,333,951 + -0.8 2,333,951 + -0.9 2,333,959 - +0.0 2,333,968 - -0.2 2,334,061 + Atu2360 0.14 -0.5 2,334,118 - Atu2360 0.17 +0.3 2,334,173 - Atu2360 0.20 +0.4 2,334,242 + Atu2360 0.23 +0.8 2,334,254 + Atu2360 0.24 +0.0 2,334,288 + Atu2360 0.25 -0.3 2,334,475 + Atu2360 0.35 -0.0 2,334,475 + Atu2360 0.35 +0.6 2,334,483 - Atu2360 0.35 +0.2 2,334,488 - Atu2360 0.36 -1.9 2,334,551 + Atu2360 0.39 -0.9 2,334,559 - Atu2360 0.39 +1.3
Or see this region's nucleotide sequence