Strain Fitness in Agrobacterium fabrum C58 around Atu2359

Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2358 and Atu2359 are separated by 34 nucleotidesAtu2359 and Atu2360 are separated by 160 nucleotides Atu2358: Atu2358 - acetyltransferase, at 2,332,208 to 2,333,191 Atu2358 Atu2359: Atu2359 - hypothetical protein, at 2,333,226 to 2,333,630 Atu2359 Atu2360: Atu2360 - methyl-accepting chemotaxis protein, at 2,333,791 to 2,335,740 Atu2360 Position (kb) 2333 2334Strain fitness (log2 ratio) -2 -1 0 1 2at 2332.239 kb on - strandat 2332.239 kb on - strandat 2332.252 kb on + strandat 2332.260 kb on - strandat 2332.329 kb on + strand, within Atu2358at 2332.379 kb on + strand, within Atu2358at 2332.404 kb on - strand, within Atu2358at 2332.409 kb on + strand, within Atu2358at 2332.414 kb on + strand, within Atu2358at 2332.414 kb on + strand, within Atu2358at 2332.422 kb on - strand, within Atu2358at 2332.422 kb on - strand, within Atu2358at 2332.422 kb on - strand, within Atu2358at 2332.422 kb on - strand, within Atu2358at 2332.422 kb on - strand, within Atu2358at 2332.422 kb on - strand, within Atu2358at 2332.478 kb on - strand, within Atu2358at 2332.498 kb on - strand, within Atu2358at 2332.544 kb on + strand, within Atu2358at 2332.552 kb on + strand, within Atu2358at 2332.619 kb on - strand, within Atu2358at 2332.619 kb on - strand, within Atu2358at 2332.641 kb on - strand, within Atu2358at 2332.658 kb on + strand, within Atu2358at 2332.671 kb on - strand, within Atu2358at 2332.686 kb on - strand, within Atu2358at 2332.746 kb on + strand, within Atu2358at 2332.759 kb on - strand, within Atu2358at 2332.768 kb on + strand, within Atu2358at 2332.832 kb on + strand, within Atu2358at 2332.837 kb on + strand, within Atu2358at 2332.905 kb on + strand, within Atu2358at 2332.978 kb on + strand, within Atu2358at 2332.986 kb on + strand, within Atu2358at 2333.037 kb on - strand, within Atu2358at 2333.163 kb on + strandat 2333.251 kb on + strandat 2333.298 kb on + strand, within Atu2359at 2333.331 kb on + strand, within Atu2359at 2333.331 kb on + strand, within Atu2359at 2333.331 kb on + strand, within Atu2359at 2333.339 kb on - strand, within Atu2359at 2333.339 kb on - strand, within Atu2359at 2333.339 kb on - strand, within Atu2359at 2333.356 kb on - strand, within Atu2359at 2333.376 kb on - strand, within Atu2359at 2333.392 kb on - strand, within Atu2359at 2333.431 kb on + strand, within Atu2359at 2333.434 kb on - strand, within Atu2359at 2333.443 kb on + strand, within Atu2359at 2333.443 kb on + strand, within Atu2359at 2333.538 kb on - strand, within Atu2359at 2333.538 kb on - strand, within Atu2359at 2333.538 kb on - strand, within Atu2359at 2333.573 kb on - strand, within Atu2359at 2333.678 kb on + strandat 2333.678 kb on + strandat 2333.703 kb on - strandat 2333.724 kb on - strandat 2333.724 kb on - strandat 2333.741 kb on - strandat 2333.750 kb on + strandat 2333.810 kb on + strandat 2333.810 kb on + strandat 2333.816 kb on + strandat 2333.824 kb on - strandat 2333.927 kb on + strandat 2333.951 kb on + strandat 2333.951 kb on + strandat 2333.951 kb on + strandat 2333.959 kb on - strandat 2333.968 kb on - strandat 2334.061 kb on + strand, within Atu2360at 2334.118 kb on - strand, within Atu2360at 2334.173 kb on - strand, within Atu2360at 2334.242 kb on + strand, within Atu2360at 2334.254 kb on + strand, within Atu2360at 2334.288 kb on + strand, within Atu2360at 2334.475 kb on + strand, within Atu2360at 2334.475 kb on + strand, within Atu2360at 2334.483 kb on - strand, within Atu2360at 2334.488 kb on - strand, within Atu2360at 2334.551 kb on + strand, within Atu2360at 2334.559 kb on - strand, within Atu2360

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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2,332,239 - +0.3
2,332,239 - +1.6
2,332,252 + +0.4
2,332,260 - -1.2
2,332,329 + Atu2358 0.12 -0.6
2,332,379 + Atu2358 0.17 -0.5
2,332,404 - Atu2358 0.20 -0.1
2,332,409 + Atu2358 0.20 -0.3
2,332,414 + Atu2358 0.21 +0.1
2,332,414 + Atu2358 0.21 -0.6
2,332,422 - Atu2358 0.22 -0.0
2,332,422 - Atu2358 0.22 +0.6
2,332,422 - Atu2358 0.22 -0.1
2,332,422 - Atu2358 0.22 +0.1
2,332,422 - Atu2358 0.22 -1.1
2,332,422 - Atu2358 0.22 -0.1
2,332,478 - Atu2358 0.27 +0.0
2,332,498 - Atu2358 0.29 +0.7
2,332,544 + Atu2358 0.34 +0.2
2,332,552 + Atu2358 0.35 -0.1
2,332,619 - Atu2358 0.42 -0.6
2,332,619 - Atu2358 0.42 +0.5
2,332,641 - Atu2358 0.44 +0.1
2,332,658 + Atu2358 0.46 +0.3
2,332,671 - Atu2358 0.47 -0.3
2,332,686 - Atu2358 0.49 -0.1
2,332,746 + Atu2358 0.55 +0.6
2,332,759 - Atu2358 0.56 +0.2
2,332,768 + Atu2358 0.57 -0.5
2,332,832 + Atu2358 0.63 +2.0
2,332,837 + Atu2358 0.64 +0.2
2,332,905 + Atu2358 0.71 -0.8
2,332,978 + Atu2358 0.78 +0.7
2,332,986 + Atu2358 0.79 -1.0
2,333,037 - Atu2358 0.84 -0.1
2,333,163 + +0.2
2,333,251 + +0.7
2,333,298 + Atu2359 0.18 +1.0
2,333,331 + Atu2359 0.26 +0.1
2,333,331 + Atu2359 0.26 +0.8
2,333,331 + Atu2359 0.26 +0.2
2,333,339 - Atu2359 0.28 +0.3
2,333,339 - Atu2359 0.28 +0.7
2,333,339 - Atu2359 0.28 +0.5
2,333,356 - Atu2359 0.32 +0.7
2,333,376 - Atu2359 0.37 +0.4
2,333,392 - Atu2359 0.41 -0.4
2,333,431 + Atu2359 0.51 +0.6
2,333,434 - Atu2359 0.51 +0.3
2,333,443 + Atu2359 0.54 +0.0
2,333,443 + Atu2359 0.54 +0.7
2,333,538 - Atu2359 0.77 +1.0
2,333,538 - Atu2359 0.77 -2.2
2,333,538 - Atu2359 0.77 +0.5
2,333,573 - Atu2359 0.86 +0.3
2,333,678 + -0.1
2,333,678 + -0.2
2,333,703 - -0.7
2,333,724 - +0.4
2,333,724 - -0.5
2,333,741 - -0.3
2,333,750 + -0.2
2,333,810 + -0.0
2,333,810 + +0.1
2,333,816 + +0.6
2,333,824 - -1.0
2,333,927 + -0.1
2,333,951 + -0.0
2,333,951 + -0.8
2,333,951 + -0.9
2,333,959 - +0.0
2,333,968 - -0.2
2,334,061 + Atu2360 0.14 -0.5
2,334,118 - Atu2360 0.17 +0.3
2,334,173 - Atu2360 0.20 +0.4
2,334,242 + Atu2360 0.23 +0.8
2,334,254 + Atu2360 0.24 +0.0
2,334,288 + Atu2360 0.25 -0.3
2,334,475 + Atu2360 0.35 -0.0
2,334,475 + Atu2360 0.35 +0.6
2,334,483 - Atu2360 0.35 +0.2
2,334,488 - Atu2360 0.36 -1.9
2,334,551 + Atu2360 0.39 -0.9
2,334,559 - Atu2360 0.39 +1.3

Or see this region's nucleotide sequence