Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0950 and Atu8088 are separated by 210 nucleotides Atu8088 and Atu0951 are separated by 54 nucleotides Atu0951 and Atu8140 are separated by 448 nucleotides
Atu0950: Atu0950 - hypothetical protein, at 938,312 to 939,976
Atu0950
Atu8088: Atu8088 - hypothetical protein, at 940,187 to 940,711
Atu8088
Atu0951: Atu0951 - large terminase phage packaging protein, at 940,766 to 941,974
Atu0951
Atu8140: Atu8140 - hypothetical protein, at 942,423 to 943,076
Atu8140
Position (kb) 940
941
942 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 939.773 kb on - strand, within Atu0950 at 939.775 kb on + strand, within Atu0950 at 939.775 kb on + strand, within Atu0950 at 939.775 kb on + strand, within Atu0950 at 939.775 kb on + strand, within Atu0950 at 939.775 kb on + strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.824 kb on - strand at 939.862 kb on + strand at 939.874 kb on + strand at 939.878 kb on + strand at 939.902 kb on + strand at 939.905 kb on - strand at 939.963 kb on - strand at 940.014 kb on + strand at 940.022 kb on - strand at 940.131 kb on - strand at 940.186 kb on + strand at 940.216 kb on + strand at 940.219 kb on + strand at 940.219 kb on + strand at 940.224 kb on - strand at 940.375 kb on - strand, within Atu8088 at 940.450 kb on + strand, within Atu8088 at 940.458 kb on - strand, within Atu8088 at 940.469 kb on + strand, within Atu8088 at 940.673 kb on - strand at 940.690 kb on - strand at 940.714 kb on - strand at 940.754 kb on + strand at 940.762 kb on - strand at 940.762 kb on - strand at 940.807 kb on - strand at 940.819 kb on + strand at 940.820 kb on - strand at 940.891 kb on - strand, within Atu0951 at 940.919 kb on - strand, within Atu0951 at 940.919 kb on - strand, within Atu0951 at 940.938 kb on + strand, within Atu0951 at 940.951 kb on - strand, within Atu0951 at 941.135 kb on - strand, within Atu0951 at 941.216 kb on + strand, within Atu0951 at 941.318 kb on - strand, within Atu0951 at 941.340 kb on - strand, within Atu0951 at 941.430 kb on - strand, within Atu0951 at 941.492 kb on + strand, within Atu0951 at 941.594 kb on - strand, within Atu0951 at 941.604 kb on - strand, within Atu0951 at 941.606 kb on + strand, within Atu0951 at 941.723 kb on - strand, within Atu0951 at 941.723 kb on - strand, within Atu0951 at 941.898 kb on + strand at 941.906 kb on - strand at 941.906 kb on - strand at 941.911 kb on + strand at 942.087 kb on - strand at 942.180 kb on + strand at 942.210 kb on + strand at 942.225 kb on - strand at 942.271 kb on + strand at 942.420 kb on + strand at 942.492 kb on + strand, within Atu8140 at 942.542 kb on + strand, within Atu8140 at 942.620 kb on + strand, within Atu8140 at 942.806 kb on - strand, within Atu8140 at 942.811 kb on - strand, within Atu8140 at 942.836 kb on + strand, within Atu8140 at 942.877 kb on - strand, within Atu8140 at 942.909 kb on - strand, within Atu8140
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 939,773 - Atu0950 0.88 +2.0 939,775 + Atu0950 0.88 -1.5 939,775 + Atu0950 0.88 -2.3 939,775 + Atu0950 0.88 -0.1 939,775 + Atu0950 0.88 -2.1 939,775 + Atu0950 0.88 +0.3 939,783 - Atu0950 0.88 -0.4 939,783 - Atu0950 0.88 +0.0 939,783 - Atu0950 0.88 +1.4 939,783 - Atu0950 0.88 +0.9 939,783 - Atu0950 0.88 +0.6 939,783 - Atu0950 0.88 +1.7 939,783 - Atu0950 0.88 +0.1 939,783 - Atu0950 0.88 +2.5 939,824 - -0.9 939,862 + +0.0 939,874 + -0.3 939,878 + -0.6 939,902 + +0.3 939,905 - -0.3 939,963 - +0.2 940,014 + -0.9 940,022 - +0.6 940,131 - -0.4 940,186 + -3.2 940,216 + -0.2 940,219 + -0.4 940,219 + +0.7 940,224 - +0.2 940,375 - Atu8088 0.36 +0.2 940,450 + Atu8088 0.50 -0.2 940,458 - Atu8088 0.52 -0.2 940,469 + Atu8088 0.54 -0.5 940,673 - -0.2 940,690 - -2.0 940,714 - -0.5 940,754 + +1.0 940,762 - -0.1 940,762 - -0.1 940,807 - +1.4 940,819 + -0.2 940,820 - -1.0 940,891 - Atu0951 0.10 +2.9 940,919 - Atu0951 0.13 +1.5 940,919 - Atu0951 0.13 +0.3 940,938 + Atu0951 0.14 +1.4 940,951 - Atu0951 0.15 -0.4 941,135 - Atu0951 0.31 -1.7 941,216 + Atu0951 0.37 -0.3 941,318 - Atu0951 0.46 +0.1 941,340 - Atu0951 0.47 +0.0 941,430 - Atu0951 0.55 +0.4 941,492 + Atu0951 0.60 -0.1 941,594 - Atu0951 0.68 +0.7 941,604 - Atu0951 0.69 +0.9 941,606 + Atu0951 0.69 +1.0 941,723 - Atu0951 0.79 +0.3 941,723 - Atu0951 0.79 -0.6 941,898 + -1.3 941,906 - +0.2 941,906 - -0.4 941,911 + -2.3 942,087 - +0.1 942,180 + +0.6 942,210 + +0.1 942,225 - +0.2 942,271 + -0.1 942,420 + +0.3 942,492 + Atu8140 0.11 +0.1 942,542 + Atu8140 0.18 -0.5 942,620 + Atu8140 0.30 +0.1 942,806 - Atu8140 0.59 +1.0 942,811 - Atu8140 0.59 +0.5 942,836 + Atu8140 0.63 -0.1 942,877 - Atu8140 0.69 -0.5 942,909 - Atu8140 0.74 -2.2
Or see this region's nucleotide sequence