Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0851 and Atu0852 are separated by 85 nucleotides Atu0852 and Atu0853 are separated by 149 nucleotides Atu0853 and Atu0854 are separated by 24 nucleotides Atu0854 and Atu0855 are separated by 97 nucleotides
Atu0851: Atu0851 - hypothetical protein, at 852,456 to 852,878
Atu0851
Atu0852: Atu0852 - transcriptional regulator, MarR family, at 852,964 to 853,410
Atu0852
Atu0853: Atu0853 - hypothetical protein, at 853,560 to 854,288
Atu0853
Atu0854: Atu0854 - hypothetical protein, at 854,313 to 854,807
Atu0854
Atu0855: Atu0855 - hypothetical protein, at 854,905 to 855,684
Atu0855
Position (kb) 853
854
855 Strain fitness (log2 ratio) -1
0
1
2 at 852.621 kb on + strand, within Atu0851 at 852.656 kb on + strand, within Atu0851 at 852.664 kb on - strand, within Atu0851 at 852.716 kb on + strand, within Atu0851 at 852.769 kb on + strand, within Atu0851 at 852.806 kb on + strand, within Atu0851 at 852.810 kb on - strand, within Atu0851 at 852.825 kb on - strand, within Atu0851 at 852.918 kb on - strand at 853.016 kb on + strand, within Atu0852 at 853.018 kb on - strand, within Atu0852 at 853.041 kb on - strand, within Atu0852 at 853.052 kb on - strand, within Atu0852 at 853.133 kb on - strand, within Atu0852 at 853.136 kb on + strand, within Atu0852 at 853.172 kb on - strand, within Atu0852 at 853.192 kb on + strand, within Atu0852 at 853.616 kb on + strand at 853.629 kb on + strand at 853.637 kb on - strand, within Atu0853 at 853.676 kb on + strand, within Atu0853 at 853.676 kb on + strand, within Atu0853 at 853.676 kb on + strand, within Atu0853 at 853.678 kb on + strand, within Atu0853 at 853.679 kb on - strand, within Atu0853 at 853.697 kb on + strand, within Atu0853 at 853.705 kb on - strand, within Atu0853 at 853.808 kb on - strand, within Atu0853 at 854.113 kb on - strand, within Atu0853 at 854.228 kb on - strand at 854.249 kb on + strand at 854.255 kb on - strand at 854.257 kb on - strand at 854.257 kb on - strand at 854.352 kb on + strand at 854.455 kb on + strand, within Atu0854 at 854.474 kb on - strand, within Atu0854 at 854.566 kb on + strand, within Atu0854 at 854.679 kb on - strand, within Atu0854 at 854.679 kb on - strand, within Atu0854 at 854.692 kb on + strand, within Atu0854 at 854.797 kb on - strand at 854.821 kb on + strand at 854.896 kb on - strand at 855.032 kb on + strand, within Atu0855 at 855.032 kb on + strand, within Atu0855 at 855.089 kb on + strand, within Atu0855 at 855.090 kb on + strand, within Atu0855 at 855.097 kb on + strand, within Atu0855 at 855.098 kb on - strand, within Atu0855 at 855.104 kb on - strand, within Atu0855 at 855.105 kb on - strand, within Atu0855 at 855.109 kb on + strand, within Atu0855 at 855.117 kb on - strand, within Atu0855 at 855.124 kb on + strand, within Atu0855 at 855.124 kb on + strand, within Atu0855 at 855.132 kb on - strand, within Atu0855 at 855.145 kb on + strand, within Atu0855 at 855.180 kb on - strand, within Atu0855 at 855.199 kb on + strand, within Atu0855 at 855.199 kb on + strand, within Atu0855 at 855.207 kb on - strand, within Atu0855 at 855.266 kb on - strand, within Atu0855 at 855.266 kb on - strand, within Atu0855 at 855.266 kb on - strand, within Atu0855
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 852,621 + Atu0851 0.39 +0.0 852,656 + Atu0851 0.47 +0.7 852,664 - Atu0851 0.49 +0.8 852,716 + Atu0851 0.61 +0.1 852,769 + Atu0851 0.74 +2.6 852,806 + Atu0851 0.83 -1.0 852,810 - Atu0851 0.84 +0.6 852,825 - Atu0851 0.87 +0.0 852,918 - +0.6 853,016 + Atu0852 0.12 -0.5 853,018 - Atu0852 0.12 +0.4 853,041 - Atu0852 0.17 +0.2 853,052 - Atu0852 0.20 +0.5 853,133 - Atu0852 0.38 +0.7 853,136 + Atu0852 0.38 -0.3 853,172 - Atu0852 0.47 -1.3 853,192 + Atu0852 0.51 +0.1 853,616 + -0.6 853,629 + +0.3 853,637 - Atu0853 0.11 -0.6 853,676 + Atu0853 0.16 +1.5 853,676 + Atu0853 0.16 +0.8 853,676 + Atu0853 0.16 -0.2 853,678 + Atu0853 0.16 +0.6 853,679 - Atu0853 0.16 +1.4 853,697 + Atu0853 0.19 -1.1 853,705 - Atu0853 0.20 +0.2 853,808 - Atu0853 0.34 -0.2 854,113 - Atu0853 0.76 +1.8 854,228 - +0.3 854,249 + -0.2 854,255 - -0.5 854,257 - +1.3 854,257 - +0.5 854,352 + +1.8 854,455 + Atu0854 0.29 +0.2 854,474 - Atu0854 0.33 +0.5 854,566 + Atu0854 0.51 +1.0 854,679 - Atu0854 0.74 +0.5 854,679 - Atu0854 0.74 -0.5 854,692 + Atu0854 0.77 +0.4 854,797 - -0.2 854,821 + -0.4 854,896 - -0.3 855,032 + Atu0855 0.16 -0.0 855,032 + Atu0855 0.16 +0.4 855,089 + Atu0855 0.24 -0.3 855,090 + Atu0855 0.24 +0.1 855,097 + Atu0855 0.25 +2.1 855,098 - Atu0855 0.25 -1.1 855,104 - Atu0855 0.26 -1.1 855,105 - Atu0855 0.26 +0.5 855,109 + Atu0855 0.26 +1.1 855,117 - Atu0855 0.27 +0.3 855,124 + Atu0855 0.28 +0.9 855,124 + Atu0855 0.28 -1.1 855,132 - Atu0855 0.29 +1.4 855,145 + Atu0855 0.31 +1.2 855,180 - Atu0855 0.35 -1.2 855,199 + Atu0855 0.38 -0.0 855,199 + Atu0855 0.38 -0.4 855,207 - Atu0855 0.39 -0.2 855,266 - Atu0855 0.46 -0.9 855,266 - Atu0855 0.46 -0.0 855,266 - Atu0855 0.46 -0.4
Or see this region's nucleotide sequence