Strain Fitness in Agrobacterium fabrum C58 around Atu6064

Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6063 and Atu6064 are separated by 134 nucleotidesAtu6064 and Atu6065 are separated by 68 nucleotidesAtu6065 and Atu6066 are separated by 139 nucleotides Atu6063: Atu6063 - oxidoreductase, GMC family, at 74,856 to 76,481 Atu6063 Atu6064: Atu6064 - haloalkane dehalogenase, at 76,616 to 77,458 Atu6064 Atu6065: Atu6065 - conserved hypothetical protein, at 77,527 to 78,150 Atu6065 Atu6066: Atu6066 - acyl-CoA dehydrogenase, at 78,290 to 79,495 Atu6066 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1at 75.623 kb on - strand, within Atu6063at 75.623 kb on - strand, within Atu6063at 75.648 kb on - strand, within Atu6063at 75.657 kb on - strand, within Atu6063at 75.676 kb on - strand, within Atu6063at 75.689 kb on - strand, within Atu6063at 75.798 kb on - strand, within Atu6063at 75.801 kb on + strand, within Atu6063at 75.801 kb on + strand, within Atu6063at 75.809 kb on - strand, within Atu6063at 75.958 kb on + strand, within Atu6063at 75.958 kb on - strand, within Atu6063at 75.961 kb on - strand, within Atu6063at 75.965 kb on + strand, within Atu6063at 75.998 kb on - strand, within Atu6063at 76.051 kb on + strand, within Atu6063at 76.157 kb on + strand, within Atu6063at 76.200 kb on - strand, within Atu6063at 76.209 kb on + strand, within Atu6063at 76.224 kb on + strand, within Atu6063at 76.224 kb on + strand, within Atu6063at 76.245 kb on + strand, within Atu6063at 76.246 kb on + strand, within Atu6063at 76.333 kb on + strandat 76.341 kb on - strandat 76.357 kb on - strandat 76.380 kb on - strandat 76.493 kb on - strandat 76.497 kb on + strandat 76.499 kb on + strandat 76.518 kb on - strandat 76.655 kb on + strandat 76.655 kb on - strandat 76.691 kb on + strandat 76.798 kb on + strand, within Atu6064at 76.824 kb on - strand, within Atu6064at 76.847 kb on + strand, within Atu6064at 76.898 kb on - strand, within Atu6064at 76.907 kb on - strand, within Atu6064at 76.945 kb on + strand, within Atu6064at 77.048 kb on + strand, within Atu6064at 77.053 kb on + strand, within Atu6064at 77.096 kb on + strand, within Atu6064at 77.113 kb on - strand, within Atu6064at 77.113 kb on - strand, within Atu6064at 77.113 kb on - strand, within Atu6064at 77.126 kb on + strand, within Atu6064at 77.133 kb on + strand, within Atu6064at 77.160 kb on + strand, within Atu6064at 77.160 kb on + strand, within Atu6064at 77.165 kb on + strand, within Atu6064at 77.168 kb on - strand, within Atu6064at 77.184 kb on + strand, within Atu6064at 77.184 kb on + strand, within Atu6064at 77.192 kb on - strand, within Atu6064at 77.244 kb on + strand, within Atu6064at 77.260 kb on + strand, within Atu6064at 77.292 kb on + strand, within Atu6064at 77.309 kb on - strand, within Atu6064at 77.420 kb on + strandat 77.420 kb on + strandat 77.475 kb on - strandat 77.563 kb on + strandat 77.575 kb on + strandat 77.575 kb on + strandat 77.617 kb on - strand, within Atu6065at 77.670 kb on + strand, within Atu6065at 77.685 kb on - strand, within Atu6065at 77.692 kb on - strand, within Atu6065at 77.754 kb on - strand, within Atu6065at 77.819 kb on - strand, within Atu6065at 77.839 kb on + strand, within Atu6065at 77.853 kb on + strand, within Atu6065at 77.860 kb on + strand, within Atu6065at 77.880 kb on - strand, within Atu6065at 77.880 kb on - strand, within Atu6065at 77.898 kb on + strand, within Atu6065at 77.935 kb on + strand, within Atu6065at 77.959 kb on - strand, within Atu6065at 78.151 kb on + strandat 78.243 kb on + strandat 78.347 kb on + strandat 78.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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75,623 - Atu6063 0.47 -1.2
75,623 - Atu6063 0.47 +0.4
75,648 - Atu6063 0.49 +0.5
75,657 - Atu6063 0.49 +0.6
75,676 - Atu6063 0.50 -1.6
75,689 - Atu6063 0.51 -0.4
75,798 - Atu6063 0.58 -0.4
75,801 + Atu6063 0.58 +0.1
75,801 + Atu6063 0.58 +0.6
75,809 - Atu6063 0.59 -0.3
75,958 + Atu6063 0.68 +0.4
75,958 - Atu6063 0.68 -0.3
75,961 - Atu6063 0.68 -0.1
75,965 + Atu6063 0.68 -0.0
75,998 - Atu6063 0.70 +0.7
76,051 + Atu6063 0.73 -1.1
76,157 + Atu6063 0.80 +0.5
76,200 - Atu6063 0.83 -0.5
76,209 + Atu6063 0.83 +0.0
76,224 + Atu6063 0.84 -0.2
76,224 + Atu6063 0.84 -0.4
76,245 + Atu6063 0.85 -0.2
76,246 + Atu6063 0.85 -0.2
76,333 + +0.3
76,341 - +0.1
76,357 - +0.6
76,380 - -1.8
76,493 - +0.4
76,497 + -0.7
76,499 + -1.9
76,518 - -0.3
76,655 + -0.4
76,655 - -0.1
76,691 + -1.0
76,798 + Atu6064 0.22 +0.4
76,824 - Atu6064 0.25 +0.8
76,847 + Atu6064 0.27 +0.1
76,898 - Atu6064 0.33 +0.1
76,907 - Atu6064 0.35 +0.6
76,945 + Atu6064 0.39 -0.5
77,048 + Atu6064 0.51 -0.6
77,053 + Atu6064 0.52 -1.6
77,096 + Atu6064 0.57 -0.9
77,113 - Atu6064 0.59 -0.4
77,113 - Atu6064 0.59 +0.4
77,113 - Atu6064 0.59 -2.6
77,126 + Atu6064 0.60 -0.2
77,133 + Atu6064 0.61 -1.7
77,160 + Atu6064 0.65 -0.1
77,160 + Atu6064 0.65 -0.5
77,165 + Atu6064 0.65 -0.0
77,168 - Atu6064 0.65 -0.1
77,184 + Atu6064 0.67 -0.4
77,184 + Atu6064 0.67 -2.6
77,192 - Atu6064 0.68 -0.4
77,244 + Atu6064 0.74 +0.4
77,260 + Atu6064 0.76 -1.6
77,292 + Atu6064 0.80 -0.1
77,309 - Atu6064 0.82 +1.7
77,420 + -0.1
77,420 + -0.1
77,475 - +1.0
77,563 + -0.3
77,575 + +0.4
77,575 + +0.8
77,617 - Atu6065 0.14 +0.2
77,670 + Atu6065 0.23 -0.0
77,685 - Atu6065 0.25 -0.8
77,692 - Atu6065 0.26 +1.1
77,754 - Atu6065 0.36 +0.5
77,819 - Atu6065 0.47 +1.4
77,839 + Atu6065 0.50 +0.3
77,853 + Atu6065 0.52 +0.9
77,860 + Atu6065 0.53 +0.6
77,880 - Atu6065 0.57 +0.4
77,880 - Atu6065 0.57 +0.2
77,898 + Atu6065 0.59 -0.1
77,935 + Atu6065 0.65 +1.7
77,959 - Atu6065 0.69 +0.3
78,151 + -0.0
78,243 + -0.1
78,347 + -0.2
78,390 - -0.2

Or see this region's nucleotide sequence