Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3505 and Atu3506 are separated by 156 nucleotides Atu3506 and Atu3507 are separated by 69 nucleotides Atu3507 and Atu3508 are separated by 297 nucleotides
Atu3505: Atu3505 - 3-hydroxyisobutyryl-CoA hydrolase, at 555,782 to 556,834
Atu3505
Atu3506: Atu3506 - hypothetical protein, at 556,991 to 557,392
Atu3506
Atu3507: Atu3507 - hypothetical protein, at 557,462 to 558,241
Atu3507
Atu3508: Atu3508 - 3-demethylubiquinone-9 3-methyltransferase, at 558,539 to 559,291
Atu3508
Position (kb) 557
558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 556.522 kb on + strand, within Atu3505 at 556.526 kb on + strand, within Atu3505 at 556.671 kb on + strand, within Atu3505 at 556.673 kb on + strand, within Atu3505 at 556.681 kb on - strand, within Atu3505 at 556.712 kb on + strand, within Atu3505 at 556.720 kb on - strand, within Atu3505 at 556.722 kb on + strand, within Atu3505 at 556.722 kb on + strand, within Atu3505 at 556.834 kb on - strand at 556.901 kb on - strand at 556.912 kb on + strand at 556.920 kb on - strand at 557.140 kb on + strand, within Atu3506 at 557.170 kb on + strand, within Atu3506 at 557.221 kb on + strand, within Atu3506 at 557.221 kb on + strand, within Atu3506 at 557.254 kb on + strand, within Atu3506 at 557.254 kb on + strand, within Atu3506 at 557.354 kb on + strand at 557.362 kb on - strand at 557.453 kb on + strand at 557.485 kb on - strand at 557.498 kb on + strand at 557.501 kb on + strand at 557.509 kb on - strand at 557.554 kb on + strand, within Atu3507 at 557.636 kb on + strand, within Atu3507 at 557.644 kb on - strand, within Atu3507 at 557.681 kb on + strand, within Atu3507 at 557.831 kb on - strand, within Atu3507 at 557.911 kb on + strand, within Atu3507 at 558.112 kb on - strand, within Atu3507 at 558.282 kb on + strand at 558.305 kb on + strand at 558.434 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 556,522 + Atu3505 0.70 +1.4 556,526 + Atu3505 0.71 -1.0 556,671 + Atu3505 0.84 -0.6 556,673 + Atu3505 0.85 -0.2 556,681 - Atu3505 0.85 -3.3 556,712 + Atu3505 0.88 -0.3 556,720 - Atu3505 0.89 -1.1 556,722 + Atu3505 0.89 +0.8 556,722 + Atu3505 0.89 -0.6 556,834 - -1.4 556,901 - +0.1 556,912 + +0.8 556,920 - -0.4 557,140 + Atu3506 0.37 -0.2 557,170 + Atu3506 0.45 -1.0 557,221 + Atu3506 0.57 +0.9 557,221 + Atu3506 0.57 -0.4 557,254 + Atu3506 0.65 +0.5 557,254 + Atu3506 0.65 +1.0 557,354 + +0.4 557,362 - -0.3 557,453 + -0.8 557,485 - -1.7 557,498 + +0.4 557,501 + +0.8 557,509 - +0.0 557,554 + Atu3507 0.12 -0.6 557,636 + Atu3507 0.22 -1.4 557,644 - Atu3507 0.23 -0.0 557,681 + Atu3507 0.28 -0.6 557,831 - Atu3507 0.47 -3.0 557,911 + Atu3507 0.58 +1.1 558,112 - Atu3507 0.83 +0.4 558,282 + +0.6 558,305 + -1.4 558,434 - +0.3
Or see this region's nucleotide sequence