Strain Fitness in Agrobacterium fabrum C58 around Atu0819

Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0818 and Atu0819 are separated by 225 nucleotidesAtu0819 and Atu0820 are separated by 245 nucleotides Atu0818: Atu0818 - phosphoadenosine phosphosulfate reductase, at 816,493 to 817,254 Atu0818 Atu0819: Atu0819 - hypothetical protein, at 817,480 to 817,920 Atu0819 Atu0820: Atu0820 - ABC transporter, substrate binding protein (sulfate), at 818,166 to 819,191 Atu0820 Position (kb) 817 818Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 816.591 kb on - strand, within Atu0818at 816.633 kb on + strand, within Atu0818at 816.709 kb on + strand, within Atu0818at 816.712 kb on - strand, within Atu0818at 816.712 kb on - strand, within Atu0818at 816.717 kb on - strand, within Atu0818at 816.752 kb on + strand, within Atu0818at 816.752 kb on + strand, within Atu0818at 816.764 kb on + strand, within Atu0818at 816.764 kb on + strand, within Atu0818at 816.842 kb on - strand, within Atu0818at 816.844 kb on + strand, within Atu0818at 816.852 kb on - strand, within Atu0818at 816.852 kb on - strand, within Atu0818at 816.870 kb on + strand, within Atu0818at 816.912 kb on + strand, within Atu0818at 816.926 kb on + strand, within Atu0818at 817.108 kb on - strand, within Atu0818at 817.132 kb on + strand, within Atu0818at 817.132 kb on + strand, within Atu0818at 817.140 kb on - strand, within Atu0818at 817.185 kb on + strandat 817.200 kb on + strandat 817.203 kb on - strandat 817.287 kb on + strandat 817.340 kb on - strandat 817.535 kb on - strand, within Atu0819at 817.701 kb on - strand, within Atu0819at 817.711 kb on + strand, within Atu0819at 817.711 kb on + strand, within Atu0819at 817.763 kb on + strand, within Atu0819at 817.773 kb on + strand, within Atu0819at 817.791 kb on - strand, within Atu0819at 817.835 kb on - strand, within Atu0819at 817.999 kb on - strandat 818.001 kb on + strandat 818.016 kb on - strandat 818.016 kb on - strandat 818.161 kb on - strandat 818.206 kb on + strandat 818.266 kb on - strandat 818.281 kb on + strand, within Atu0820at 818.321 kb on + strand, within Atu0820at 818.339 kb on - strand, within Atu0820at 818.341 kb on + strand, within Atu0820at 818.348 kb on - strand, within Atu0820at 818.407 kb on + strand, within Atu0820at 818.486 kb on + strand, within Atu0820at 818.560 kb on + strand, within Atu0820at 818.569 kb on - strand, within Atu0820at 818.569 kb on - strand, within Atu0820at 818.569 kb on - strand, within Atu0820at 818.625 kb on - strand, within Atu0820at 818.658 kb on - strand, within Atu0820at 818.664 kb on + strand, within Atu0820at 818.668 kb on + strand, within Atu0820at 818.687 kb on + strand, within Atu0820at 818.687 kb on + strand, within Atu0820at 818.687 kb on + strand, within Atu0820at 818.695 kb on - strand, within Atu0820at 818.695 kb on - strand, within Atu0820at 818.695 kb on - strand, within Atu0820at 818.695 kb on - strand, within Atu0820at 818.708 kb on + strand, within Atu0820at 818.714 kb on + strand, within Atu0820at 818.716 kb on - strand, within Atu0820at 818.716 kb on - strand, within Atu0820at 818.740 kb on - strand, within Atu0820at 818.782 kb on + strand, within Atu0820at 818.792 kb on + strand, within Atu0820at 818.792 kb on + strand, within Atu0820at 818.800 kb on - strand, within Atu0820

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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816,591 - Atu0818 0.13 +0.1
816,633 + Atu0818 0.18 +0.4
816,709 + Atu0818 0.28 +0.2
816,712 - Atu0818 0.29 +0.5
816,712 - Atu0818 0.29 -3.7
816,717 - Atu0818 0.29 -1.7
816,752 + Atu0818 0.34 +0.2
816,752 + Atu0818 0.34 +0.9
816,764 + Atu0818 0.36 -0.5
816,764 + Atu0818 0.36 +0.6
816,842 - Atu0818 0.46 -1.4
816,844 + Atu0818 0.46 +0.2
816,852 - Atu0818 0.47 -1.1
816,852 - Atu0818 0.47 -0.7
816,870 + Atu0818 0.49 -3.1
816,912 + Atu0818 0.55 -0.1
816,926 + Atu0818 0.57 -1.6
817,108 - Atu0818 0.81 +0.6
817,132 + Atu0818 0.84 -2.0
817,132 + Atu0818 0.84 -0.1
817,140 - Atu0818 0.85 -1.0
817,185 + -0.3
817,200 + -0.5
817,203 - -0.8
817,287 + -1.2
817,340 - -0.7
817,535 - Atu0819 0.12 -0.7
817,701 - Atu0819 0.50 +3.4
817,711 + Atu0819 0.52 -0.4
817,711 + Atu0819 0.52 +0.8
817,763 + Atu0819 0.64 +2.0
817,773 + Atu0819 0.66 +1.3
817,791 - Atu0819 0.71 -0.8
817,835 - Atu0819 0.80 -1.7
817,999 - -0.2
818,001 + +0.8
818,016 - +1.0
818,016 - -0.4
818,161 - -1.1
818,206 + -1.7
818,266 - -1.9
818,281 + Atu0820 0.11 +0.4
818,321 + Atu0820 0.15 -0.8
818,339 - Atu0820 0.17 +0.1
818,341 + Atu0820 0.17 +0.0
818,348 - Atu0820 0.18 -0.5
818,407 + Atu0820 0.23 +0.3
818,486 + Atu0820 0.31 -0.3
818,560 + Atu0820 0.38 +0.3
818,569 - Atu0820 0.39 +0.6
818,569 - Atu0820 0.39 +0.4
818,569 - Atu0820 0.39 -1.3
818,625 - Atu0820 0.45 -0.7
818,658 - Atu0820 0.48 +1.2
818,664 + Atu0820 0.49 -0.2
818,668 + Atu0820 0.49 -0.4
818,687 + Atu0820 0.51 -0.6
818,687 + Atu0820 0.51 +1.6
818,687 + Atu0820 0.51 -2.3
818,695 - Atu0820 0.52 -0.9
818,695 - Atu0820 0.52 -0.4
818,695 - Atu0820 0.52 -0.2
818,695 - Atu0820 0.52 +2.2
818,708 + Atu0820 0.53 -0.1
818,714 + Atu0820 0.53 -1.1
818,716 - Atu0820 0.54 +1.1
818,716 - Atu0820 0.54 +2.2
818,740 - Atu0820 0.56 +0.1
818,782 + Atu0820 0.60 +0.5
818,792 + Atu0820 0.61 -0.2
818,792 + Atu0820 0.61 -0.0
818,800 - Atu0820 0.62 -0.1

Or see this region's nucleotide sequence