Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0691 and Atu8111 overlap by 45 nucleotides Atu8111 and Atu0692 overlap by 222 nucleotides Atu0692 and Atu0693 are separated by 116 nucleotides
Atu0691: Atu0691 - hypothetical protein, at 687,766 to 688,692
Atu0691
Atu8111: Atu8111 - tRNA-Arg, at 688,648 to 688,961
Atu8111
Atu0692: Atu0692 - glutathione-regulated potassium-efflux system protein, at 688,740 to 690,572
Atu0692
Atu0693: Atu0693 - PmbA/TldD related protein, at 690,689 to 692,035
Atu0693
Position (kb) 688
689
690
691 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 687.756 kb on + strand at 687.854 kb on + strand at 687.943 kb on + strand, within Atu0691 at 687.951 kb on - strand, within Atu0691 at 687.979 kb on - strand, within Atu0691 at 687.984 kb on + strand, within Atu0691 at 688.104 kb on + strand, within Atu0691 at 688.128 kb on + strand, within Atu0691 at 688.133 kb on + strand, within Atu0691 at 688.136 kb on - strand, within Atu0691 at 688.236 kb on + strand, within Atu0691 at 688.256 kb on - strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.313 kb on - strand, within Atu0691 at 688.313 kb on - strand, within Atu0691 at 688.313 kb on - strand, within Atu0691 at 688.470 kb on + strand, within Atu0691 at 688.473 kb on - strand, within Atu0691 at 688.562 kb on - strand, within Atu0691 at 688.587 kb on + strand, within Atu0691 at 688.646 kb on + strand at 688.687 kb on - strand at 688.818 kb on + strand at 688.849 kb on + strand at 688.857 kb on - strand at 688.857 kb on - strand at 688.884 kb on + strand at 688.976 kb on - strand, within Atu0692 at 689.138 kb on + strand, within Atu0692 at 689.171 kb on + strand, within Atu0692 at 689.183 kb on + strand, within Atu0692 at 689.269 kb on - strand, within Atu0692 at 689.321 kb on + strand, within Atu0692 at 689.366 kb on - strand, within Atu0692 at 689.470 kb on - strand, within Atu0692 at 689.472 kb on - strand, within Atu0692 at 689.572 kb on + strand, within Atu0692 at 689.682 kb on + strand, within Atu0692 at 689.682 kb on + strand, within Atu0692 at 689.690 kb on - strand, within Atu0692 at 689.735 kb on - strand, within Atu0692 at 689.817 kb on + strand, within Atu0692 at 689.825 kb on - strand, within Atu0692 at 689.845 kb on + strand, within Atu0692 at 689.847 kb on - strand, within Atu0692 at 689.847 kb on - strand, within Atu0692 at 689.979 kb on - strand, within Atu0692 at 690.411 kb on + strand at 690.469 kb on - strand at 690.488 kb on - strand at 690.493 kb on - strand at 690.493 kb on - strand at 690.600 kb on - strand at 690.653 kb on - strand at 690.708 kb on + strand at 690.716 kb on + strand at 690.828 kb on - strand, within Atu0693 at 690.893 kb on - strand, within Atu0693 at 690.966 kb on - strand, within Atu0693 at 690.966 kb on - strand, within Atu0693 at 691.071 kb on - strand, within Atu0693 at 691.097 kb on - strand, within Atu0693 at 691.111 kb on + strand, within Atu0693 at 691.160 kb on + strand, within Atu0693 at 691.258 kb on - strand, within Atu0693 at 691.296 kb on - strand, within Atu0693 at 691.502 kb on + strand, within Atu0693
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 687,756 + -2.3 687,854 + -0.1 687,943 + Atu0691 0.19 -0.2 687,951 - Atu0691 0.20 +1.0 687,979 - Atu0691 0.23 -1.1 687,984 + Atu0691 0.24 +0.4 688,104 + Atu0691 0.36 -1.3 688,128 + Atu0691 0.39 -2.5 688,133 + Atu0691 0.40 -1.5 688,136 - Atu0691 0.40 +0.7 688,236 + Atu0691 0.51 -0.2 688,256 - Atu0691 0.53 -0.4 688,305 + Atu0691 0.58 -1.0 688,305 + Atu0691 0.58 +0.3 688,305 + Atu0691 0.58 +0.7 688,305 + Atu0691 0.58 +0.4 688,305 + Atu0691 0.58 -0.0 688,305 + Atu0691 0.58 -0.6 688,305 + Atu0691 0.58 +0.5 688,313 - Atu0691 0.59 +0.0 688,313 - Atu0691 0.59 +0.6 688,313 - Atu0691 0.59 -0.1 688,470 + Atu0691 0.76 -1.9 688,473 - Atu0691 0.76 -0.5 688,562 - Atu0691 0.86 +0.3 688,587 + Atu0691 0.89 +0.2 688,646 + +1.6 688,687 - -0.5 688,818 + -1.6 688,849 + -3.1 688,857 - +0.1 688,857 - -1.4 688,884 + -3.6 688,976 - Atu0692 0.13 -2.4 689,138 + Atu0692 0.22 -2.4 689,171 + Atu0692 0.24 -1.0 689,183 + Atu0692 0.24 -2.1 689,269 - Atu0692 0.29 -2.2 689,321 + Atu0692 0.32 -1.1 689,366 - Atu0692 0.34 -2.3 689,470 - Atu0692 0.40 -2.0 689,472 - Atu0692 0.40 -2.7 689,572 + Atu0692 0.45 -0.9 689,682 + Atu0692 0.51 -3.9 689,682 + Atu0692 0.51 -3.3 689,690 - Atu0692 0.52 -2.2 689,735 - Atu0692 0.54 -2.6 689,817 + Atu0692 0.59 -1.7 689,825 - Atu0692 0.59 -2.9 689,845 + Atu0692 0.60 -2.2 689,847 - Atu0692 0.60 -3.0 689,847 - Atu0692 0.60 -1.5 689,979 - Atu0692 0.68 -2.4 690,411 + -1.6 690,469 - +0.8 690,488 - -1.1 690,493 - -2.1 690,493 - -2.0 690,600 - -0.1 690,653 - +0.7 690,708 + +0.6 690,716 + +0.2 690,828 - Atu0693 0.10 +0.5 690,893 - Atu0693 0.15 +0.8 690,966 - Atu0693 0.21 +1.1 690,966 - Atu0693 0.21 -0.5 691,071 - Atu0693 0.28 +1.8 691,097 - Atu0693 0.30 +0.2 691,111 + Atu0693 0.31 -0.4 691,160 + Atu0693 0.35 +0.2 691,258 - Atu0693 0.42 -0.7 691,296 - Atu0693 0.45 +0.2 691,502 + Atu0693 0.60 +0.9
Or see this region's nucleotide sequence