Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3436 and Atu3437 overlap by 23 nucleotides Atu3437 and Atu3438 are separated by 18 nucleotides Atu3438 and Atu3439 are separated by 67 nucleotides
Atu3436: Atu3436 - oligopeptide ABC transporter ATPase, at 482,733 to 483,731
Atu3436
Atu3437: Atu3437 - oligopeptide ABC transporter ATPase, at 483,709 to 484,644
Atu3437
Atu3438: Atu3438 - oxidoreductase, at 484,663 to 485,718
Atu3438
Atu3439: Atu3439 - acyl-CoA dehydrogenase, at 485,786 to 487,024
Atu3439
Position (kb) 484
485
486 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 483.719 kb on + strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.910 kb on - strand, within Atu3437 at 483.919 kb on - strand, within Atu3437 at 483.942 kb on + strand, within Atu3437 at 484.009 kb on - strand, within Atu3437 at 484.060 kb on - strand, within Atu3437 at 484.104 kb on + strand, within Atu3437 at 484.130 kb on + strand, within Atu3437 at 484.182 kb on - strand, within Atu3437 at 484.319 kb on + strand, within Atu3437 at 484.319 kb on + strand, within Atu3437 at 484.325 kb on + strand, within Atu3437 at 484.400 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.415 kb on - strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.437 kb on - strand, within Atu3437 at 484.437 kb on - strand, within Atu3437 at 484.600 kb on + strand at 484.793 kb on + strand, within Atu3438 at 484.800 kb on - strand, within Atu3438 at 484.848 kb on - strand, within Atu3438 at 484.868 kb on - strand, within Atu3438 at 484.921 kb on + strand, within Atu3438 at 484.956 kb on + strand, within Atu3438 at 485.125 kb on - strand, within Atu3438 at 485.160 kb on + strand, within Atu3438 at 485.240 kb on - strand, within Atu3438 at 485.276 kb on - strand, within Atu3438 at 485.276 kb on - strand, within Atu3438 at 485.293 kb on + strand, within Atu3438 at 485.301 kb on - strand, within Atu3438 at 485.428 kb on + strand, within Atu3438 at 485.470 kb on + strand, within Atu3438 at 485.633 kb on + strand at 485.640 kb on - strand at 485.676 kb on + strand at 485.701 kb on - strand at 485.708 kb on - strand at 485.734 kb on - strand at 485.771 kb on - strand at 485.771 kb on - strand at 485.892 kb on + strand at 485.892 kb on + strand at 485.926 kb on - strand, within Atu3439 at 485.959 kb on + strand, within Atu3439 at 486.018 kb on + strand, within Atu3439 at 486.026 kb on - strand, within Atu3439 at 486.052 kb on + strand, within Atu3439 at 486.105 kb on + strand, within Atu3439 at 486.157 kb on - strand, within Atu3439 at 486.183 kb on - strand, within Atu3439 at 486.214 kb on - strand, within Atu3439 at 486.231 kb on - strand, within Atu3439 at 486.231 kb on - strand, within Atu3439 at 486.393 kb on + strand, within Atu3439 at 486.509 kb on - strand, within Atu3439 at 486.581 kb on + strand, within Atu3439 at 486.589 kb on - strand, within Atu3439 at 486.589 kb on - strand, within Atu3439 at 486.589 kb on - strand, within Atu3439 at 486.589 kb on - strand, within Atu3439 at 486.595 kb on + strand, within Atu3439 at 486.605 kb on + strand, within Atu3439 at 486.605 kb on + strand, within Atu3439 at 486.605 kb on + strand, within Atu3439 at 486.605 kb on + strand, within Atu3439 at 486.613 kb on - strand, within Atu3439 at 486.613 kb on - strand, within Atu3439 at 486.613 kb on - strand, within Atu3439 at 486.629 kb on + strand, within Atu3439
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 483,719 + +0.7 483,802 - -0.5 483,802 - +2.0 483,802 - -0.9 483,802 - +0.8 483,802 - +1.0 483,910 - Atu3437 0.21 -1.5 483,919 - Atu3437 0.22 -2.3 483,942 + Atu3437 0.25 +0.7 484,009 - Atu3437 0.32 -2.2 484,060 - Atu3437 0.38 -1.0 484,104 + Atu3437 0.42 +0.5 484,130 + Atu3437 0.45 -1.8 484,182 - Atu3437 0.51 +0.2 484,319 + Atu3437 0.65 +1.5 484,319 + Atu3437 0.65 -1.7 484,325 + Atu3437 0.66 +0.0 484,400 + Atu3437 0.74 +0.2 484,407 + Atu3437 0.75 -0.6 484,407 + Atu3437 0.75 -0.7 484,407 + Atu3437 0.75 +0.3 484,415 - Atu3437 0.75 -0.2 484,428 + Atu3437 0.77 -1.8 484,428 + Atu3437 0.77 -0.8 484,428 + Atu3437 0.77 -1.6 484,436 - Atu3437 0.78 -0.7 484,436 - Atu3437 0.78 +0.6 484,436 - Atu3437 0.78 -2.8 484,437 - Atu3437 0.78 +2.5 484,437 - Atu3437 0.78 -3.3 484,600 + -0.4 484,793 + Atu3438 0.12 +1.4 484,800 - Atu3438 0.13 -1.1 484,848 - Atu3438 0.18 +1.7 484,868 - Atu3438 0.19 -0.4 484,921 + Atu3438 0.24 +1.2 484,956 + Atu3438 0.28 -2.9 485,125 - Atu3438 0.44 +0.1 485,160 + Atu3438 0.47 -0.5 485,240 - Atu3438 0.55 +0.1 485,276 - Atu3438 0.58 +1.2 485,276 - Atu3438 0.58 -0.5 485,293 + Atu3438 0.60 -0.1 485,301 - Atu3438 0.60 -1.9 485,428 + Atu3438 0.72 -0.2 485,470 + Atu3438 0.76 +0.4 485,633 + -0.3 485,640 - +0.5 485,676 + -1.6 485,701 - -1.4 485,708 - +0.5 485,734 - +0.4 485,771 - +0.4 485,771 - +1.6 485,892 + +0.7 485,892 + +0.6 485,926 - Atu3439 0.11 -1.0 485,959 + Atu3439 0.14 +0.3 486,018 + Atu3439 0.19 -0.8 486,026 - Atu3439 0.19 -1.1 486,052 + Atu3439 0.21 -2.2 486,105 + Atu3439 0.26 +0.5 486,157 - Atu3439 0.30 +1.7 486,183 - Atu3439 0.32 -1.5 486,214 - Atu3439 0.35 -0.2 486,231 - Atu3439 0.36 -2.7 486,231 - Atu3439 0.36 +0.0 486,393 + Atu3439 0.49 +1.5 486,509 - Atu3439 0.58 +1.3 486,581 + Atu3439 0.64 +0.3 486,589 - Atu3439 0.65 +0.6 486,589 - Atu3439 0.65 -0.1 486,589 - Atu3439 0.65 +0.8 486,589 - Atu3439 0.65 -2.0 486,595 + Atu3439 0.65 -0.5 486,605 + Atu3439 0.66 -0.7 486,605 + Atu3439 0.66 +1.0 486,605 + Atu3439 0.66 -0.6 486,605 + Atu3439 0.66 +0.2 486,613 - Atu3439 0.67 +0.7 486,613 - Atu3439 0.67 -0.1 486,613 - Atu3439 0.67 -1.5 486,629 + Atu3439 0.68 +0.1
Or see this region's nucleotide sequence