Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0726 and Atu0727 are separated by 157 nucleotides Atu0727 and Atu0728 are separated by 174 nucleotides Atu0728 and Atu0730 are separated by 222 nucleotides
Atu0726: Atu0726 - ring hydroxylating dioxygenase, alpha-subunit, at 726,173 to 727,417
Atu0726
Atu0727: Atu0727 - ferredoxin I, at 727,575 to 728,507
Atu0727
Atu0728: Atu0728 - hypothetical protein, at 728,682 to 729,143
Atu0728
Atu0730: Atu0730 - hypothetical protein, at 729,366 to 729,890
Atu0730
Position (kb) 727
728
729 Strain fitness (log2 ratio) -2
-1
0
1
2 at 726.665 kb on + strand, within Atu0726 at 726.700 kb on + strand, within Atu0726 at 726.744 kb on - strand, within Atu0726 at 726.803 kb on - strand, within Atu0726 at 726.816 kb on + strand, within Atu0726 at 726.881 kb on - strand, within Atu0726 at 726.948 kb on - strand, within Atu0726 at 727.021 kb on + strand, within Atu0726 at 727.105 kb on + strand, within Atu0726 at 727.134 kb on + strand, within Atu0726 at 727.179 kb on - strand, within Atu0726 at 727.300 kb on + strand at 727.305 kb on + strand at 727.378 kb on + strand at 727.393 kb on + strand at 727.394 kb on + strand at 727.399 kb on + strand at 727.459 kb on + strand at 727.554 kb on + strand at 727.557 kb on - strand at 727.631 kb on + strand at 727.631 kb on + strand at 727.633 kb on + strand at 727.633 kb on + strand at 727.633 kb on + strand at 727.633 kb on + strand at 727.641 kb on - strand at 727.641 kb on - strand at 727.641 kb on - strand at 727.645 kb on + strand at 727.651 kb on - strand at 727.653 kb on - strand at 727.653 kb on - strand at 727.736 kb on - strand, within Atu0727 at 727.741 kb on + strand, within Atu0727 at 727.886 kb on - strand, within Atu0727 at 727.946 kb on + strand, within Atu0727 at 727.966 kb on + strand, within Atu0727 at 728.020 kb on + strand, within Atu0727 at 728.033 kb on - strand, within Atu0727 at 728.033 kb on - strand, within Atu0727 at 728.048 kb on + strand, within Atu0727 at 728.056 kb on - strand, within Atu0727 at 728.104 kb on + strand, within Atu0727 at 728.112 kb on - strand, within Atu0727 at 728.244 kb on + strand, within Atu0727 at 728.252 kb on - strand, within Atu0727 at 728.270 kb on + strand, within Atu0727 at 728.307 kb on + strand, within Atu0727 at 728.315 kb on - strand, within Atu0727 at 728.315 kb on - strand, within Atu0727 at 728.452 kb on + strand at 728.489 kb on + strand at 728.559 kb on - strand at 728.614 kb on + strand at 728.621 kb on + strand at 728.622 kb on - strand at 728.622 kb on - strand at 728.622 kb on - strand at 728.791 kb on - strand, within Atu0728 at 728.804 kb on - strand, within Atu0728 at 728.814 kb on + strand, within Atu0728 at 728.842 kb on + strand, within Atu0728 at 729.023 kb on - strand, within Atu0728 at 729.103 kb on - strand at 729.202 kb on + strand at 729.249 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 726,665 + Atu0726 0.40 -1.0 726,700 + Atu0726 0.42 +0.1 726,744 - Atu0726 0.46 -0.8 726,803 - Atu0726 0.51 -0.9 726,816 + Atu0726 0.52 -0.3 726,881 - Atu0726 0.57 +0.4 726,948 - Atu0726 0.62 -0.5 727,021 + Atu0726 0.68 +0.7 727,105 + Atu0726 0.75 +1.2 727,134 + Atu0726 0.77 -0.8 727,179 - Atu0726 0.81 -1.6 727,300 + -2.7 727,305 + -0.2 727,378 + -0.4 727,393 + -1.4 727,394 + -1.0 727,399 + +0.1 727,459 + +0.5 727,554 + +1.9 727,557 - +0.8 727,631 + -0.1 727,631 + -1.5 727,633 + +0.1 727,633 + +1.9 727,633 + -0.6 727,633 + -2.3 727,641 - +0.5 727,641 - -0.8 727,641 - -1.0 727,645 + -2.2 727,651 - -0.7 727,653 - -0.4 727,653 - +0.5 727,736 - Atu0727 0.17 -0.2 727,741 + Atu0727 0.18 -1.0 727,886 - Atu0727 0.33 -0.5 727,946 + Atu0727 0.40 -0.3 727,966 + Atu0727 0.42 -0.1 728,020 + Atu0727 0.48 -1.7 728,033 - Atu0727 0.49 +0.8 728,033 - Atu0727 0.49 +0.1 728,048 + Atu0727 0.51 -0.2 728,056 - Atu0727 0.52 +0.8 728,104 + Atu0727 0.57 +0.0 728,112 - Atu0727 0.58 -1.2 728,244 + Atu0727 0.72 +1.4 728,252 - Atu0727 0.73 -0.8 728,270 + Atu0727 0.74 -0.2 728,307 + Atu0727 0.78 +0.1 728,315 - Atu0727 0.79 -0.0 728,315 - Atu0727 0.79 +0.2 728,452 + -0.5 728,489 + +0.7 728,559 - +0.4 728,614 + -1.6 728,621 + +1.0 728,622 - +0.1 728,622 - +0.4 728,622 - -0.4 728,791 - Atu0728 0.24 +1.7 728,804 - Atu0728 0.26 -0.2 728,814 + Atu0728 0.29 -2.2 728,842 + Atu0728 0.35 -0.0 729,023 - Atu0728 0.74 -2.4 729,103 - +1.3 729,202 + -0.0 729,249 + +0.1
Or see this region's nucleotide sequence