Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0264 and Atu0265 overlap by 1 nucleotides Atu0265 and Atu0266 are separated by 180 nucleotides
Atu0264: Atu0264 - transcriptional regulator, AraC family, at 261,540 to 262,523
Atu0264
Atu0265: Atu0265 - hydrolase, at 262,523 to 263,083
Atu0265
Atu0266: Atu0266 - oxidoreductase, at 263,264 to 264,247
Atu0266
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 261.704 kb on - strand, within Atu0264 at 261.770 kb on + strand, within Atu0264 at 261.799 kb on + strand, within Atu0264 at 261.804 kb on + strand, within Atu0264 at 261.831 kb on + strand, within Atu0264 at 261.916 kb on + strand, within Atu0264 at 261.961 kb on + strand, within Atu0264 at 262.064 kb on + strand, within Atu0264 at 262.064 kb on + strand, within Atu0264 at 262.107 kb on + strand, within Atu0264 at 262.112 kb on + strand, within Atu0264 at 262.117 kb on + strand, within Atu0264 at 262.117 kb on + strand, within Atu0264 at 262.125 kb on - strand, within Atu0264 at 262.158 kb on - strand, within Atu0264 at 262.209 kb on + strand, within Atu0264 at 262.230 kb on - strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.348 kb on - strand, within Atu0264 at 262.348 kb on - strand, within Atu0264 at 262.359 kb on + strand, within Atu0264 at 262.591 kb on + strand, within Atu0265 at 262.623 kb on + strand, within Atu0265 at 262.660 kb on - strand, within Atu0265 at 262.738 kb on + strand, within Atu0265 at 262.811 kb on + strand, within Atu0265 at 262.846 kb on + strand, within Atu0265 at 262.854 kb on - strand, within Atu0265 at 262.854 kb on - strand, within Atu0265 at 262.866 kb on + strand, within Atu0265 at 262.904 kb on + strand, within Atu0265 at 262.904 kb on + strand, within Atu0265 at 262.912 kb on - strand, within Atu0265 at 262.918 kb on - strand, within Atu0265 at 262.928 kb on + strand, within Atu0265 at 263.103 kb on + strand at 263.373 kb on + strand, within Atu0266 at 263.411 kb on + strand, within Atu0266 at 263.445 kb on + strand, within Atu0266 at 263.453 kb on - strand, within Atu0266 at 263.453 kb on - strand, within Atu0266 at 263.453 kb on - strand, within Atu0266 at 263.469 kb on + strand, within Atu0266 at 263.562 kb on + strand, within Atu0266 at 263.607 kb on + strand, within Atu0266 at 263.686 kb on + strand, within Atu0266 at 263.700 kb on + strand, within Atu0266 at 263.702 kb on + strand, within Atu0266 at 263.713 kb on - strand, within Atu0266 at 263.780 kb on - strand, within Atu0266 at 263.808 kb on + strand, within Atu0266 at 263.836 kb on + strand, within Atu0266 at 263.841 kb on + strand, within Atu0266 at 263.859 kb on - strand, within Atu0266 at 263.859 kb on - strand, within Atu0266 at 263.993 kb on - strand, within Atu0266 at 264.062 kb on + strand, within Atu0266
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 261,704 - Atu0264 0.17 +0.6 261,770 + Atu0264 0.23 -3.6 261,799 + Atu0264 0.26 -1.9 261,804 + Atu0264 0.27 +0.0 261,831 + Atu0264 0.30 +0.6 261,916 + Atu0264 0.38 +1.0 261,961 + Atu0264 0.43 -0.3 262,064 + Atu0264 0.53 +0.5 262,064 + Atu0264 0.53 +0.5 262,107 + Atu0264 0.58 -0.1 262,112 + Atu0264 0.58 +0.1 262,117 + Atu0264 0.59 -1.1 262,117 + Atu0264 0.59 -0.1 262,125 - Atu0264 0.59 +0.4 262,158 - Atu0264 0.63 +0.1 262,209 + Atu0264 0.68 -1.1 262,230 - Atu0264 0.70 -2.5 262,340 + Atu0264 0.81 +0.7 262,340 + Atu0264 0.81 +1.0 262,340 + Atu0264 0.81 +2.1 262,340 + Atu0264 0.81 +0.3 262,348 - Atu0264 0.82 +0.2 262,348 - Atu0264 0.82 +0.2 262,359 + Atu0264 0.83 -1.3 262,591 + Atu0265 0.12 +0.2 262,623 + Atu0265 0.18 +0.2 262,660 - Atu0265 0.24 +1.2 262,738 + Atu0265 0.38 +1.0 262,811 + Atu0265 0.51 +0.4 262,846 + Atu0265 0.58 +0.5 262,854 - Atu0265 0.59 +0.5 262,854 - Atu0265 0.59 +0.2 262,866 + Atu0265 0.61 +0.1 262,904 + Atu0265 0.68 -0.4 262,904 + Atu0265 0.68 -0.3 262,912 - Atu0265 0.69 +0.8 262,918 - Atu0265 0.70 +0.8 262,928 + Atu0265 0.72 -2.4 263,103 + -1.9 263,373 + Atu0266 0.11 -0.5 263,411 + Atu0266 0.15 -0.8 263,445 + Atu0266 0.18 -0.4 263,453 - Atu0266 0.19 +1.2 263,453 - Atu0266 0.19 -1.7 263,453 - Atu0266 0.19 -0.3 263,469 + Atu0266 0.21 -0.6 263,562 + Atu0266 0.30 -0.8 263,607 + Atu0266 0.35 +0.2 263,686 + Atu0266 0.43 +2.4 263,700 + Atu0266 0.44 -2.6 263,702 + Atu0266 0.45 -0.4 263,713 - Atu0266 0.46 -0.6 263,780 - Atu0266 0.52 +0.7 263,808 + Atu0266 0.55 -0.2 263,836 + Atu0266 0.58 +0.5 263,841 + Atu0266 0.59 -2.5 263,859 - Atu0266 0.60 +1.2 263,859 - Atu0266 0.60 -2.1 263,993 - Atu0266 0.74 +0.3 264,062 + Atu0266 0.81 -0.6
Or see this region's nucleotide sequence