Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0193 and Atu0194 overlap by 26 nucleotides
Atu0193: Atu0193 - glutamine synthetase, at 196,923 to 198,281
Atu0193
Atu0194: Atu0194 - oxidoreductase, at 198,256 to 199,584
Atu0194
Position (kb) 196
197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.015 kb on + strand at 196.020 kb on + strand at 196.083 kb on - strand at 196.085 kb on - strand at 196.126 kb on + strand at 196.128 kb on + strand at 196.142 kb on + strand at 196.167 kb on + strand at 196.194 kb on + strand at 196.200 kb on - strand at 196.200 kb on - strand at 196.200 kb on - strand at 196.274 kb on + strand at 196.275 kb on + strand at 196.285 kb on + strand at 196.345 kb on - strand at 196.347 kb on + strand at 196.355 kb on - strand at 196.362 kb on - strand at 196.405 kb on + strand at 196.469 kb on + strand at 196.505 kb on + strand at 196.505 kb on + strand at 196.505 kb on + strand at 196.505 kb on + strand at 196.513 kb on - strand at 196.538 kb on - strand at 196.556 kb on - strand at 196.610 kb on - strand at 196.647 kb on + strand at 196.812 kb on + strand at 196.853 kb on - strand at 196.986 kb on + strand at 197.446 kb on - strand, within Atu0193 at 197.510 kb on + strand, within Atu0193 at 197.518 kb on - strand, within Atu0193 at 197.678 kb on + strand, within Atu0193 at 197.883 kb on + strand, within Atu0193 at 197.888 kb on + strand, within Atu0193 at 197.888 kb on + strand, within Atu0193 at 198.194 kb on + strand at 198.261 kb on + strand at 198.275 kb on + strand at 198.322 kb on + strand at 198.368 kb on + strand at 198.434 kb on + strand, within Atu0194 at 198.455 kb on + strand, within Atu0194 at 198.463 kb on - strand, within Atu0194 at 198.487 kb on - strand, within Atu0194 at 198.499 kb on - strand, within Atu0194 at 198.648 kb on - strand, within Atu0194 at 198.868 kb on - strand, within Atu0194 at 198.868 kb on - strand, within Atu0194 at 198.868 kb on - strand, within Atu0194 at 198.878 kb on - strand, within Atu0194 at 198.967 kb on + strand, within Atu0194 at 198.975 kb on - strand, within Atu0194 at 198.975 kb on - strand, within Atu0194 at 198.985 kb on - strand, within Atu0194 at 199.094 kb on + strand, within Atu0194 at 199.108 kb on - strand, within Atu0194 at 199.204 kb on + strand, within Atu0194 at 199.204 kb on + strand, within Atu0194 at 199.212 kb on - strand, within Atu0194 at 199.213 kb on - strand, within Atu0194 at 199.213 kb on - strand, within Atu0194
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 196,015 + +1.3 196,020 + -0.4 196,083 - -0.3 196,085 - -0.4 196,126 + -0.2 196,128 + -1.3 196,142 + +1.1 196,167 + -1.6 196,194 + +0.7 196,200 - -0.3 196,200 - -1.5 196,200 - +1.0 196,274 + -0.1 196,275 + +0.5 196,285 + +0.7 196,345 - +0.2 196,347 + -0.1 196,355 - +1.5 196,362 - +0.0 196,405 + +0.8 196,469 + -0.8 196,505 + +0.5 196,505 + +2.1 196,505 + +0.4 196,505 + -1.3 196,513 - +0.2 196,538 - +1.1 196,556 - +0.2 196,610 - -2.5 196,647 + +1.1 196,812 + -2.9 196,853 - +0.7 196,986 + +0.2 197,446 - Atu0193 0.38 -2.4 197,510 + Atu0193 0.43 +1.3 197,518 - Atu0193 0.44 -0.5 197,678 + Atu0193 0.56 +0.1 197,883 + Atu0193 0.71 +1.5 197,888 + Atu0193 0.71 +0.6 197,888 + Atu0193 0.71 +1.0 198,194 + +0.7 198,261 + +1.1 198,275 + +0.1 198,322 + -1.0 198,368 + +1.6 198,434 + Atu0194 0.13 +1.1 198,455 + Atu0194 0.15 -0.1 198,463 - Atu0194 0.16 +1.8 198,487 - Atu0194 0.17 +1.0 198,499 - Atu0194 0.18 +0.3 198,648 - Atu0194 0.29 +0.5 198,868 - Atu0194 0.46 -0.1 198,868 - Atu0194 0.46 +0.4 198,868 - Atu0194 0.46 +0.8 198,878 - Atu0194 0.47 +0.4 198,967 + Atu0194 0.53 +0.6 198,975 - Atu0194 0.54 +1.1 198,975 - Atu0194 0.54 +0.6 198,985 - Atu0194 0.55 -0.1 199,094 + Atu0194 0.63 -0.0 199,108 - Atu0194 0.64 -0.4 199,204 + Atu0194 0.71 +0.9 199,204 + Atu0194 0.71 -1.9 199,212 - Atu0194 0.72 -1.2 199,213 - Atu0194 0.72 +2.2 199,213 - Atu0194 0.72 -0.7
Or see this region's nucleotide sequence