Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3593 and Atu3594 are separated by 32 nucleotides Atu3594 and Atu3595 are separated by 182 nucleotides Atu3595 and Atu3596 are separated by 25 nucleotides
Atu3593: Atu3593 - hypothetical protein, at 648,108 to 648,686
Atu3593
Atu3594: Atu3594 - hypothetical protein, at 648,719 to 649,492
Atu3594
Atu3595: Atu3595 - electron transfer flavoprotein subunit beta, at 649,675 to 650,421
Atu3595
Atu3596: Atu3596 - electron transfer flavoprotein alpha subunit, at 650,447 to 651,376
Atu3596
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 648.687 kb on + strand at 648.690 kb on - strand at 648.704 kb on + strand at 648.712 kb on - strand at 648.728 kb on + strand at 648.800 kb on + strand, within Atu3594 at 648.808 kb on - strand, within Atu3594 at 648.813 kb on - strand, within Atu3594 at 648.839 kb on - strand, within Atu3594 at 648.844 kb on + strand, within Atu3594 at 648.844 kb on + strand, within Atu3594 at 648.846 kb on - strand, within Atu3594 at 648.852 kb on - strand, within Atu3594 at 648.878 kb on - strand, within Atu3594 at 648.911 kb on - strand, within Atu3594 at 648.944 kb on + strand, within Atu3594 at 649.166 kb on - strand, within Atu3594 at 649.173 kb on + strand, within Atu3594 at 649.213 kb on - strand, within Atu3594 at 649.221 kb on + strand, within Atu3594 at 649.239 kb on - strand, within Atu3594 at 649.250 kb on - strand, within Atu3594 at 649.268 kb on + strand, within Atu3594 at 649.337 kb on + strand, within Atu3594 at 649.382 kb on - strand, within Atu3594 at 649.399 kb on + strand, within Atu3594 at 649.409 kb on - strand, within Atu3594 at 649.416 kb on + strand at 649.480 kb on - strand at 649.491 kb on - strand at 649.491 kb on - strand at 649.573 kb on + strand at 650.415 kb on + strand at 651.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 648,687 + -0.7 648,690 - +0.0 648,704 + +3.4 648,712 - -0.7 648,728 + +1.9 648,800 + Atu3594 0.10 -2.2 648,808 - Atu3594 0.11 +0.8 648,813 - Atu3594 0.12 +1.8 648,839 - Atu3594 0.16 -0.0 648,844 + Atu3594 0.16 +0.9 648,844 + Atu3594 0.16 +0.0 648,846 - Atu3594 0.16 -0.3 648,852 - Atu3594 0.17 +0.8 648,878 - Atu3594 0.21 +0.2 648,911 - Atu3594 0.25 -0.3 648,944 + Atu3594 0.29 +2.3 649,166 - Atu3594 0.58 +0.3 649,173 + Atu3594 0.59 -0.3 649,213 - Atu3594 0.64 +0.1 649,221 + Atu3594 0.65 +1.5 649,239 - Atu3594 0.67 -1.4 649,250 - Atu3594 0.69 +0.2 649,268 + Atu3594 0.71 +0.2 649,337 + Atu3594 0.80 -1.1 649,382 - Atu3594 0.86 -0.2 649,399 + Atu3594 0.88 +0.2 649,409 - Atu3594 0.89 +0.2 649,416 + +0.6 649,480 - -0.9 649,491 - +0.3 649,491 - +0.2 649,573 + -0.2 650,415 + +0.1 651,352 + -0.5
Or see this region's nucleotide sequence