Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3358 and Atu3359 overlap by 4 nucleotides Atu3359 and Atu3360 are separated by 12 nucleotides Atu3360 and Atu3361 are separated by 4 nucleotides
Atu3358: Atu3358 - amino acid ABC transporter permease, at 396,414 to 397,046
Atu3358
Atu3359: Atu3359 - amino acid ABC transporter permease, at 397,043 to 397,825
Atu3359
Atu3360: Atu3360 - amino acid ABC transporter ATPase/permease, at 397,838 to 398,653
Atu3360
Atu3361: Atu3361 - hypothetical protein, at 398,658 to 400,004
Atu3361
Position (kb) 397
398
399 Strain fitness (log2 ratio) -2
-1
0
1
2 at 396.906 kb on + strand, within Atu3358 at 396.911 kb on + strand, within Atu3358 at 396.919 kb on - strand, within Atu3358 at 396.921 kb on - strand, within Atu3358 at 396.933 kb on + strand, within Atu3358 at 397.000 kb on + strand at 397.034 kb on - strand at 397.097 kb on + strand at 397.105 kb on + strand at 397.128 kb on + strand, within Atu3359 at 397.166 kb on - strand, within Atu3359 at 397.327 kb on - strand, within Atu3359 at 397.338 kb on + strand, within Atu3359 at 397.367 kb on + strand, within Atu3359 at 397.375 kb on - strand, within Atu3359 at 397.405 kb on + strand, within Atu3359 at 397.426 kb on + strand, within Atu3359 at 397.434 kb on - strand, within Atu3359 at 397.434 kb on - strand, within Atu3359 at 397.519 kb on - strand, within Atu3359 at 397.540 kb on - strand, within Atu3359 at 397.541 kb on - strand, within Atu3359 at 397.566 kb on + strand, within Atu3359 at 397.572 kb on + strand, within Atu3359 at 397.579 kb on - strand, within Atu3359 at 397.580 kb on - strand, within Atu3359 at 397.754 kb on + strand at 397.824 kb on + strand at 397.832 kb on - strand at 397.848 kb on - strand at 397.848 kb on - strand at 397.848 kb on - strand at 397.861 kb on - strand at 397.900 kb on + strand at 397.933 kb on + strand, within Atu3360 at 397.944 kb on - strand, within Atu3360 at 398.015 kb on + strand, within Atu3360 at 398.023 kb on - strand, within Atu3360 at 398.067 kb on - strand, within Atu3360 at 398.079 kb on + strand, within Atu3360 at 398.087 kb on - strand, within Atu3360 at 398.270 kb on - strand, within Atu3360 at 398.330 kb on + strand, within Atu3360 at 398.338 kb on - strand, within Atu3360 at 398.369 kb on - strand, within Atu3360 at 398.515 kb on - strand, within Atu3360 at 398.540 kb on + strand, within Atu3360 at 398.553 kb on - strand, within Atu3360 at 398.948 kb on - strand, within Atu3361 at 398.948 kb on - strand, within Atu3361 at 398.948 kb on - strand, within Atu3361 at 398.948 kb on - strand, within Atu3361 at 398.960 kb on + strand, within Atu3361 at 398.987 kb on + strand, within Atu3361 at 399.005 kb on - strand, within Atu3361 at 399.029 kb on - strand, within Atu3361 at 399.096 kb on - strand, within Atu3361 at 399.155 kb on - strand, within Atu3361 at 399.167 kb on + strand, within Atu3361 at 399.268 kb on + strand, within Atu3361 at 399.268 kb on + strand, within Atu3361 at 399.281 kb on - strand, within Atu3361 at 399.395 kb on + strand, within Atu3361 at 399.426 kb on + strand, within Atu3361 at 399.496 kb on - strand, within Atu3361 at 399.596 kb on - strand, within Atu3361
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 396,906 + Atu3358 0.78 -0.0 396,911 + Atu3358 0.79 -0.7 396,919 - Atu3358 0.80 -1.8 396,921 - Atu3358 0.80 -1.7 396,933 + Atu3358 0.82 -0.3 397,000 + -0.5 397,034 - +0.3 397,097 + -0.3 397,105 + -0.6 397,128 + Atu3359 0.11 +0.4 397,166 - Atu3359 0.16 -1.1 397,327 - Atu3359 0.36 -0.2 397,338 + Atu3359 0.38 +0.7 397,367 + Atu3359 0.41 +1.0 397,375 - Atu3359 0.42 -0.4 397,405 + Atu3359 0.46 -0.7 397,426 + Atu3359 0.49 -0.1 397,434 - Atu3359 0.50 +0.1 397,434 - Atu3359 0.50 +0.3 397,519 - Atu3359 0.61 +0.3 397,540 - Atu3359 0.63 -0.6 397,541 - Atu3359 0.64 +0.0 397,566 + Atu3359 0.67 -1.1 397,572 + Atu3359 0.68 -0.5 397,579 - Atu3359 0.68 -0.4 397,580 - Atu3359 0.69 -0.4 397,754 + -0.6 397,824 + -1.1 397,832 - -0.0 397,848 - +0.9 397,848 - -0.7 397,848 - +1.6 397,861 - +0.5 397,900 + -0.8 397,933 + Atu3360 0.12 +0.4 397,944 - Atu3360 0.13 +0.0 398,015 + Atu3360 0.22 -0.1 398,023 - Atu3360 0.23 -1.3 398,067 - Atu3360 0.28 +0.2 398,079 + Atu3360 0.30 -2.1 398,087 - Atu3360 0.31 +0.9 398,270 - Atu3360 0.53 -0.5 398,330 + Atu3360 0.60 -1.4 398,338 - Atu3360 0.61 +0.9 398,369 - Atu3360 0.65 +0.3 398,515 - Atu3360 0.83 -0.9 398,540 + Atu3360 0.86 -0.4 398,553 - Atu3360 0.88 +0.5 398,948 - Atu3361 0.22 +0.3 398,948 - Atu3361 0.22 -0.2 398,948 - Atu3361 0.22 +0.5 398,948 - Atu3361 0.22 +0.6 398,960 + Atu3361 0.22 -0.1 398,987 + Atu3361 0.24 +0.6 399,005 - Atu3361 0.26 +0.4 399,029 - Atu3361 0.28 -1.1 399,096 - Atu3361 0.33 +1.0 399,155 - Atu3361 0.37 -0.1 399,167 + Atu3361 0.38 +0.3 399,268 + Atu3361 0.45 -0.6 399,268 + Atu3361 0.45 -0.7 399,281 - Atu3361 0.46 +0.3 399,395 + Atu3361 0.55 +0.1 399,426 + Atu3361 0.57 -2.6 399,496 - Atu3361 0.62 +2.7 399,596 - Atu3361 0.70 -0.1
Or see this region's nucleotide sequence