Strain Fitness in Agrobacterium fabrum C58 around Atu3282

Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3281 and Atu3282 are separated by 51 nucleotidesAtu3282 and Atu3283 are separated by 159 nucleotides Atu3281: Atu3281 - ABC transporter permease, at 306,220 to 307,296 Atu3281 Atu3282: Atu3282 - sugar ABC transporter substrate-binding protein, at 307,348 to 308,598 Atu3282 Atu3283: Atu3283 - sugar ABC transporter permease, at 308,758 to 309,684 Atu3283 Position (kb) 307 308 309Strain fitness (log2 ratio) -2 -1 0 1 2at 306.483 kb on + strand, within Atu3281at 306.523 kb on - strand, within Atu3281at 306.523 kb on - strand, within Atu3281at 306.541 kb on + strand, within Atu3281at 306.598 kb on - strand, within Atu3281at 306.659 kb on + strand, within Atu3281at 306.710 kb on - strand, within Atu3281at 306.799 kb on - strand, within Atu3281at 306.801 kb on + strand, within Atu3281at 306.809 kb on - strand, within Atu3281at 306.830 kb on + strand, within Atu3281at 306.861 kb on + strand, within Atu3281at 306.861 kb on + strand, within Atu3281at 306.869 kb on - strand, within Atu3281at 306.869 kb on - strand, within Atu3281at 306.869 kb on - strand, within Atu3281at 306.869 kb on - strand, within Atu3281at 306.888 kb on - strand, within Atu3281at 306.888 kb on - strand, within Atu3281at 307.090 kb on + strand, within Atu3281at 307.122 kb on + strand, within Atu3281at 307.146 kb on - strand, within Atu3281at 307.190 kb on - strandat 307.203 kb on + strandat 307.238 kb on + strandat 307.393 kb on - strandat 307.405 kb on - strandat 307.523 kb on + strand, within Atu3282at 307.546 kb on + strand, within Atu3282at 307.587 kb on - strand, within Atu3282at 307.790 kb on + strand, within Atu3282at 307.803 kb on - strand, within Atu3282at 307.840 kb on + strand, within Atu3282at 307.850 kb on - strand, within Atu3282at 307.852 kb on + strand, within Atu3282at 307.864 kb on + strand, within Atu3282at 307.933 kb on + strand, within Atu3282at 308.009 kb on + strand, within Atu3282at 308.196 kb on + strand, within Atu3282at 308.196 kb on + strand, within Atu3282at 308.198 kb on - strand, within Atu3282at 308.292 kb on + strand, within Atu3282at 308.307 kb on - strand, within Atu3282at 308.343 kb on + strand, within Atu3282at 308.343 kb on - strand, within Atu3282at 308.365 kb on + strand, within Atu3282at 308.373 kb on + strand, within Atu3282at 308.386 kb on + strand, within Atu3282at 308.388 kb on + strand, within Atu3282at 308.388 kb on + strand, within Atu3282at 308.388 kb on + strand, within Atu3282at 308.388 kb on + strand, within Atu3282at 308.396 kb on - strand, within Atu3282at 308.396 kb on - strand, within Atu3282at 308.396 kb on - strand, within Atu3282at 308.396 kb on - strand, within Atu3282at 308.414 kb on - strand, within Atu3282at 308.433 kb on + strand, within Atu3282at 308.468 kb on + strand, within Atu3282at 308.518 kb on - strandat 308.624 kb on + strandat 308.665 kb on - strandat 308.724 kb on + strandat 308.759 kb on - strandat 308.770 kb on + strandat 308.911 kb on + strand, within Atu3283at 308.918 kb on - strand, within Atu3283at 308.924 kb on + strand, within Atu3283at 308.940 kb on + strand, within Atu3283at 308.942 kb on + strand, within Atu3283at 308.942 kb on + strand, within Atu3283at 308.948 kb on - strand, within Atu3283at 308.948 kb on - strand, within Atu3283at 308.950 kb on - strand, within Atu3283at 308.950 kb on - strand, within Atu3283at 309.053 kb on - strand, within Atu3283at 309.066 kb on + strand, within Atu3283at 309.080 kb on + strand, within Atu3283at 309.080 kb on + strand, within Atu3283at 309.080 kb on + strand, within Atu3283at 309.081 kb on - strand, within Atu3283at 309.088 kb on - strand, within Atu3283at 309.088 kb on - strand, within Atu3283at 309.088 kb on - strand, within Atu3283at 309.088 kb on - strand, within Atu3283at 309.102 kb on + strand, within Atu3283at 309.136 kb on + strand, within Atu3283at 309.164 kb on + strand, within Atu3283at 309.172 kb on + strand, within Atu3283at 309.213 kb on + strand, within Atu3283at 309.223 kb on + strand, within Atu3283at 309.223 kb on + strand, within Atu3283at 309.385 kb on + strand, within Atu3283at 309.446 kb on - strand, within Atu3283at 309.502 kb on - strand, within Atu3283at 309.550 kb on - strand, within Atu3283at 309.556 kb on + strand, within Atu3283at 309.567 kb on + strand, within Atu3283at 309.573 kb on - strand, within Atu3283at 309.575 kb on - strand, within Atu3283

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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306,483 + Atu3281 0.24 +1.6
306,523 - Atu3281 0.28 +1.4
306,523 - Atu3281 0.28 +0.2
306,541 + Atu3281 0.30 +1.4
306,598 - Atu3281 0.35 -0.0
306,659 + Atu3281 0.41 -0.5
306,710 - Atu3281 0.45 +0.1
306,799 - Atu3281 0.54 +2.4
306,801 + Atu3281 0.54 +1.0
306,809 - Atu3281 0.55 -0.2
306,830 + Atu3281 0.57 +2.3
306,861 + Atu3281 0.60 -0.6
306,861 + Atu3281 0.60 +0.1
306,869 - Atu3281 0.60 +0.3
306,869 - Atu3281 0.60 -0.7
306,869 - Atu3281 0.60 -0.7
306,869 - Atu3281 0.60 +0.4
306,888 - Atu3281 0.62 +1.4
306,888 - Atu3281 0.62 +0.4
307,090 + Atu3281 0.81 -2.2
307,122 + Atu3281 0.84 +1.0
307,146 - Atu3281 0.86 -0.8
307,190 - +1.4
307,203 + +0.8
307,238 + +0.3
307,393 - +0.1
307,405 - +0.7
307,523 + Atu3282 0.14 -0.2
307,546 + Atu3282 0.16 -0.8
307,587 - Atu3282 0.19 +0.1
307,790 + Atu3282 0.35 -1.0
307,803 - Atu3282 0.36 +0.4
307,840 + Atu3282 0.39 +1.0
307,850 - Atu3282 0.40 +0.1
307,852 + Atu3282 0.40 +0.2
307,864 + Atu3282 0.41 +0.2
307,933 + Atu3282 0.47 -1.0
308,009 + Atu3282 0.53 +0.6
308,196 + Atu3282 0.68 +0.1
308,196 + Atu3282 0.68 +0.7
308,198 - Atu3282 0.68 +0.7
308,292 + Atu3282 0.75 +1.3
308,307 - Atu3282 0.77 -1.0
308,343 + Atu3282 0.80 -0.3
308,343 - Atu3282 0.80 +0.7
308,365 + Atu3282 0.81 +0.4
308,373 + Atu3282 0.82 -0.1
308,386 + Atu3282 0.83 -0.9
308,388 + Atu3282 0.83 -2.1
308,388 + Atu3282 0.83 +0.2
308,388 + Atu3282 0.83 -0.5
308,388 + Atu3282 0.83 +0.2
308,396 - Atu3282 0.84 +1.2
308,396 - Atu3282 0.84 -0.8
308,396 - Atu3282 0.84 +0.3
308,396 - Atu3282 0.84 -0.1
308,414 - Atu3282 0.85 -0.2
308,433 + Atu3282 0.87 +0.0
308,468 + Atu3282 0.90 -0.2
308,518 - +2.0
308,624 + -0.2
308,665 - -0.6
308,724 + -0.2
308,759 - +0.5
308,770 + -0.8
308,911 + Atu3283 0.17 -0.3
308,918 - Atu3283 0.17 +0.8
308,924 + Atu3283 0.18 +0.2
308,940 + Atu3283 0.20 -1.6
308,942 + Atu3283 0.20 +0.1
308,942 + Atu3283 0.20 -0.6
308,948 - Atu3283 0.20 +0.2
308,948 - Atu3283 0.20 +0.2
308,950 - Atu3283 0.21 +2.2
308,950 - Atu3283 0.21 -0.3
309,053 - Atu3283 0.32 -0.0
309,066 + Atu3283 0.33 +1.2
309,080 + Atu3283 0.35 +0.2
309,080 + Atu3283 0.35 -0.9
309,080 + Atu3283 0.35 -0.6
309,081 - Atu3283 0.35 -0.4
309,088 - Atu3283 0.36 -0.5
309,088 - Atu3283 0.36 +0.1
309,088 - Atu3283 0.36 -1.0
309,088 - Atu3283 0.36 -1.0
309,102 + Atu3283 0.37 -0.7
309,136 + Atu3283 0.41 -0.5
309,164 + Atu3283 0.44 +0.3
309,172 + Atu3283 0.45 +0.8
309,213 + Atu3283 0.49 +0.8
309,223 + Atu3283 0.50 +0.3
309,223 + Atu3283 0.50 -0.2
309,385 + Atu3283 0.68 -0.1
309,446 - Atu3283 0.74 +0.5
309,502 - Atu3283 0.80 +0.3
309,550 - Atu3283 0.85 +0.5
309,556 + Atu3283 0.86 +0.7
309,567 + Atu3283 0.87 +1.3
309,573 - Atu3283 0.88 +1.1
309,575 - Atu3283 0.88 +1.0

Or see this region's nucleotide sequence