Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0379 and Atu0380 are separated by 45 nucleotides Atu0380 and Atu0381 are separated by 47 nucleotides Atu0381 and Atu0382 are separated by 167 nucleotides Atu0382 and Atu0383 are separated by 12 nucleotides
Atu0379: Atu0379 - hypothetical protein, at 372,820 to 373,737
Atu0379
Atu0380: Atu0380 - acetylglutamate kinase, at 373,783 to 374,667
Atu0380
Atu0381: Atu0381 - hypothetical protein, at 374,715 to 374,855
Atu0381
Atu0382: Atu0382 - hypothetical protein, at 375,023 to 375,400
Atu0382
Atu0383: Atu0383 - GTP-binding protein, at 375,413 to 376,066
Atu0383
Position (kb) 373
374
375 Strain fitness (log2 ratio) -1
0
1 at 372.816 kb on + strand at 372.816 kb on + strand at 372.818 kb on - strand at 372.870 kb on + strand at 372.899 kb on - strand at 372.899 kb on - strand at 372.899 kb on - strand at 372.899 kb on - strand at 372.899 kb on - strand at 373.027 kb on + strand, within Atu0379 at 373.117 kb on + strand, within Atu0379 at 373.125 kb on - strand, within Atu0379 at 373.170 kb on - strand, within Atu0379 at 373.332 kb on - strand, within Atu0379 at 373.335 kb on + strand, within Atu0379 at 373.342 kb on + strand, within Atu0379 at 373.343 kb on - strand, within Atu0379 at 373.463 kb on + strand, within Atu0379 at 373.563 kb on + strand, within Atu0379 at 373.631 kb on + strand, within Atu0379 at 373.673 kb on + strand at 373.691 kb on - strand at 373.757 kb on + strand at 373.757 kb on + strand at 373.765 kb on - strand at 374.721 kb on - strand at 374.767 kb on + strand, within Atu0381 at 374.767 kb on + strand, within Atu0381 at 374.768 kb on - strand, within Atu0381 at 374.921 kb on - strand at 374.944 kb on + strand at 374.988 kb on - strand at 375.238 kb on + strand, within Atu0382 at 375.249 kb on + strand, within Atu0382 at 375.252 kb on - strand, within Atu0382 at 375.257 kb on - strand, within Atu0382 at 375.372 kb on - strand at 375.382 kb on + strand at 375.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 372,816 + -0.1 372,816 + +0.2 372,818 - -0.4 372,870 + -0.1 372,899 - +0.2 372,899 - +0.2 372,899 - -0.3 372,899 - +0.3 372,899 - +0.5 373,027 + Atu0379 0.23 +0.2 373,117 + Atu0379 0.32 -0.4 373,125 - Atu0379 0.33 +1.4 373,170 - Atu0379 0.38 +0.7 373,332 - Atu0379 0.56 -0.5 373,335 + Atu0379 0.56 +0.1 373,342 + Atu0379 0.57 -0.5 373,343 - Atu0379 0.57 -0.5 373,463 + Atu0379 0.70 -0.1 373,563 + Atu0379 0.81 -0.1 373,631 + Atu0379 0.88 +0.2 373,673 + +0.7 373,691 - +0.3 373,757 + -0.5 373,757 + -0.0 373,765 - -0.8 374,721 - +0.6 374,767 + Atu0381 0.37 +0.9 374,767 + Atu0381 0.37 -0.3 374,768 - Atu0381 0.38 +1.0 374,921 - +0.5 374,944 + -0.3 374,988 - -0.1 375,238 + Atu0382 0.57 -0.7 375,249 + Atu0382 0.60 -1.6 375,252 - Atu0382 0.61 -0.1 375,257 - Atu0382 0.62 -1.1 375,372 - +0.1 375,382 + -0.2 375,382 + +0.3
Or see this region's nucleotide sequence