Strain Fitness in Agrobacterium fabrum C58 around Atu5536

Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5534 and Atu5535 overlap by 1 nucleotidesAtu5535 and Atu5536 are separated by 37 nucleotidesAtu5536 and Atu5537 are separated by 500 nucleotides Atu5534: Atu5534 - ABC transporter nucleotide binding/ATPase, at 528,424 to 529,173 Atu5534 Atu5535: Atu5535 - ABC transporter nucleotide binding/ATPase, at 529,173 to 529,868 Atu5535 Atu5536: Atu5536 - amidohydrolase, at 529,906 to 531,645 Atu5536 Atu5537: Atu5537 - mercuric reductase, at 532,146 to 533,507 Atu5537 Position (kb) 529 530 531 532Strain fitness (log2 ratio) -2 -1 0 1 2 3at 528.939 kb on + strand, within Atu5534at 528.977 kb on - strand, within Atu5534at 528.977 kb on - strand, within Atu5534at 528.979 kb on + strand, within Atu5534at 528.987 kb on - strand, within Atu5534at 529.018 kb on - strand, within Atu5534at 529.043 kb on - strand, within Atu5534at 529.098 kb on - strand, within Atu5534at 529.098 kb on - strand, within Atu5534at 529.117 kb on + strandat 529.125 kb on - strandat 529.156 kb on - strandat 529.204 kb on - strandat 529.204 kb on - strandat 529.228 kb on + strandat 529.228 kb on + strandat 529.228 kb on + strandat 529.236 kb on - strandat 529.236 kb on - strandat 529.236 kb on - strandat 529.301 kb on + strand, within Atu5535at 529.301 kb on + strand, within Atu5535at 529.309 kb on + strand, within Atu5535at 529.364 kb on - strand, within Atu5535at 529.397 kb on + strand, within Atu5535at 529.401 kb on + strand, within Atu5535at 529.416 kb on + strand, within Atu5535at 529.421 kb on + strand, within Atu5535at 529.424 kb on - strand, within Atu5535at 529.424 kb on - strand, within Atu5535at 529.429 kb on - strand, within Atu5535at 529.474 kb on + strand, within Atu5535at 529.546 kb on + strand, within Atu5535at 529.556 kb on + strand, within Atu5535at 529.607 kb on + strand, within Atu5535at 529.622 kb on + strand, within Atu5535at 529.622 kb on + strand, within Atu5535at 529.657 kb on - strand, within Atu5535at 529.672 kb on - strand, within Atu5535at 529.672 kb on - strand, within Atu5535at 529.768 kb on + strand, within Atu5535at 529.768 kb on + strand, within Atu5535at 529.842 kb on - strandat 529.853 kb on + strandat 529.853 kb on + strandat 529.853 kb on + strandat 529.854 kb on + strandat 529.861 kb on - strandat 529.861 kb on - strandat 529.861 kb on - strandat 529.872 kb on - strandat 529.920 kb on + strandat 529.928 kb on - strandat 529.942 kb on - strandat 530.026 kb on + strandat 530.036 kb on - strandat 530.059 kb on + strandat 530.093 kb on - strand, within Atu5536at 530.108 kb on + strand, within Atu5536at 530.167 kb on - strand, within Atu5536at 530.226 kb on + strand, within Atu5536at 530.289 kb on - strand, within Atu5536at 530.373 kb on - strand, within Atu5536at 530.373 kb on - strand, within Atu5536at 530.373 kb on - strand, within Atu5536at 530.373 kb on - strand, within Atu5536at 530.373 kb on - strand, within Atu5536at 530.373 kb on - strand, within Atu5536at 530.373 kb on - strand, within Atu5536at 530.403 kb on + strand, within Atu5536at 530.408 kb on + strand, within Atu5536at 530.446 kb on - strand, within Atu5536at 530.446 kb on - strand, within Atu5536at 530.516 kb on + strand, within Atu5536at 530.522 kb on - strand, within Atu5536at 530.526 kb on + strand, within Atu5536at 530.651 kb on + strand, within Atu5536at 530.656 kb on + strand, within Atu5536at 530.664 kb on - strand, within Atu5536at 530.773 kb on - strand, within Atu5536at 530.794 kb on - strand, within Atu5536at 530.806 kb on - strand, within Atu5536at 530.837 kb on + strand, within Atu5536at 530.864 kb on - strand, within Atu5536at 530.942 kb on + strand, within Atu5536at 531.013 kb on - strand, within Atu5536at 531.047 kb on + strand, within Atu5536at 531.049 kb on + strand, within Atu5536at 531.049 kb on + strand, within Atu5536at 531.057 kb on - strand, within Atu5536at 531.072 kb on - strand, within Atu5536at 531.076 kb on + strand, within Atu5536at 531.112 kb on - strand, within Atu5536at 531.138 kb on + strand, within Atu5536at 531.139 kb on + strand, within Atu5536at 531.207 kb on + strand, within Atu5536at 531.220 kb on - strand, within Atu5536at 531.245 kb on + strand, within Atu5536at 531.253 kb on - strand, within Atu5536at 531.329 kb on - strand, within Atu5536at 531.341 kb on + strand, within Atu5536at 531.341 kb on + strand, within Atu5536at 531.432 kb on + strand, within Atu5536at 531.439 kb on - strand, within Atu5536at 531.555 kb on + strandat 531.563 kb on - strandat 531.563 kb on - strandat 531.563 kb on - strandat 531.563 kb on - strandat 531.627 kb on + strandat 531.697 kb on + strandat 531.722 kb on - strandat 531.722 kb on - strandat 531.722 kb on - strandat 531.913 kb on + strandat 531.928 kb on + strandat 531.946 kb on - strandat 531.951 kb on - strandat 532.005 kb on - strandat 532.074 kb on - strandat 532.170 kb on - strandat 532.197 kb on - strandat 532.237 kb on + strandat 532.298 kb on + strand, within Atu5537at 532.329 kb on - strand, within Atu5537at 532.355 kb on + strand, within Atu5537at 532.356 kb on + strand, within Atu5537at 532.364 kb on - strand, within Atu5537at 532.364 kb on - strand, within Atu5537at 532.373 kb on - strand, within Atu5537at 532.399 kb on - strand, within Atu5537at 532.492 kb on - strand, within Atu5537at 532.559 kb on - strand, within Atu5537at 532.583 kb on - strand, within Atu5537

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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528,939 + Atu5534 0.69 +0.4
528,977 - Atu5534 0.74 -0.6
528,977 - Atu5534 0.74 -0.3
528,979 + Atu5534 0.74 -0.4
528,987 - Atu5534 0.75 -0.4
529,018 - Atu5534 0.79 +0.2
529,043 - Atu5534 0.83 -1.4
529,098 - Atu5534 0.90 -0.7
529,098 - Atu5534 0.90 -0.2
529,117 + +1.0
529,125 - +1.2
529,156 - -0.6
529,204 - +1.3
529,204 - +0.1
529,228 + -0.6
529,228 + -0.8
529,228 + +0.9
529,236 - +0.0
529,236 - +0.8
529,236 - +0.2
529,301 + Atu5535 0.18 -0.4
529,301 + Atu5535 0.18 -0.1
529,309 + Atu5535 0.20 +0.3
529,364 - Atu5535 0.27 +0.0
529,397 + Atu5535 0.32 +3.3
529,401 + Atu5535 0.33 +0.0
529,416 + Atu5535 0.35 -0.1
529,421 + Atu5535 0.36 +0.7
529,424 - Atu5535 0.36 +0.1
529,424 - Atu5535 0.36 +0.6
529,429 - Atu5535 0.37 +1.5
529,474 + Atu5535 0.43 +0.4
529,546 + Atu5535 0.54 +0.4
529,556 + Atu5535 0.55 -0.7
529,607 + Atu5535 0.62 -0.1
529,622 + Atu5535 0.65 +0.4
529,622 + Atu5535 0.65 +1.7
529,657 - Atu5535 0.70 +0.3
529,672 - Atu5535 0.72 +2.0
529,672 - Atu5535 0.72 +0.2
529,768 + Atu5535 0.85 -0.2
529,768 + Atu5535 0.85 +1.6
529,842 - +0.2
529,853 + -0.1
529,853 + +0.9
529,853 + -0.9
529,854 + +0.2
529,861 - +1.1
529,861 - -0.5
529,861 - +0.1
529,872 - -0.2
529,920 + +1.4
529,928 - +0.1
529,942 - +0.1
530,026 + -0.9
530,036 - +1.5
530,059 + +0.2
530,093 - Atu5536 0.11 +0.0
530,108 + Atu5536 0.12 -0.6
530,167 - Atu5536 0.15 +0.4
530,226 + Atu5536 0.18 +1.8
530,289 - Atu5536 0.22 -0.3
530,373 - Atu5536 0.27 +0.3
530,373 - Atu5536 0.27 -0.2
530,373 - Atu5536 0.27 -0.8
530,373 - Atu5536 0.27 -0.0
530,373 - Atu5536 0.27 +0.9
530,373 - Atu5536 0.27 -0.5
530,373 - Atu5536 0.27 +0.4
530,403 + Atu5536 0.29 -0.2
530,408 + Atu5536 0.29 -0.2
530,446 - Atu5536 0.31 +1.6
530,446 - Atu5536 0.31 -1.0
530,516 + Atu5536 0.35 +0.2
530,522 - Atu5536 0.35 +2.9
530,526 + Atu5536 0.36 -0.1
530,651 + Atu5536 0.43 +0.5
530,656 + Atu5536 0.43 -0.5
530,664 - Atu5536 0.44 +1.6
530,773 - Atu5536 0.50 +0.6
530,794 - Atu5536 0.51 -0.3
530,806 - Atu5536 0.52 +0.7
530,837 + Atu5536 0.54 +0.3
530,864 - Atu5536 0.55 +0.4
530,942 + Atu5536 0.60 -0.7
531,013 - Atu5536 0.64 +0.3
531,047 + Atu5536 0.66 +0.3
531,049 + Atu5536 0.66 +0.5
531,049 + Atu5536 0.66 +0.4
531,057 - Atu5536 0.66 +1.2
531,072 - Atu5536 0.67 +1.0
531,076 + Atu5536 0.67 -0.2
531,112 - Atu5536 0.69 +0.7
531,138 + Atu5536 0.71 +1.2
531,139 + Atu5536 0.71 -2.0
531,207 + Atu5536 0.75 +0.1
531,220 - Atu5536 0.76 +0.8
531,245 + Atu5536 0.77 +0.4
531,253 - Atu5536 0.77 +0.2
531,329 - Atu5536 0.82 -0.3
531,341 + Atu5536 0.82 -0.1
531,341 + Atu5536 0.82 +0.3
531,432 + Atu5536 0.88 -0.4
531,439 - Atu5536 0.88 -0.7
531,555 + +0.8
531,563 - -1.3
531,563 - -0.7
531,563 - +0.1
531,563 - -0.2
531,627 + +0.5
531,697 + -0.0
531,722 - -0.4
531,722 - +0.8
531,722 - +2.6
531,913 + +0.7
531,928 + +0.3
531,946 - -1.4
531,951 - +0.5
532,005 - -0.6
532,074 - +1.0
532,170 - +0.3
532,197 - +0.4
532,237 + +0.4
532,298 + Atu5537 0.11 -0.2
532,329 - Atu5537 0.13 -0.3
532,355 + Atu5537 0.15 +0.0
532,356 + Atu5537 0.15 -1.1
532,364 - Atu5537 0.16 +0.4
532,364 - Atu5537 0.16 +0.4
532,373 - Atu5537 0.17 +0.4
532,399 - Atu5537 0.19 +0.5
532,492 - Atu5537 0.25 +0.6
532,559 - Atu5537 0.30 -1.6
532,583 - Atu5537 0.32 +0.2

Or see this region's nucleotide sequence