Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3536 and Atu3537 are separated by 3 nucleotides Atu3537 and Atu3538 are separated by 135 nucleotides Atu3538 and Atu3539 are separated by 30 nucleotides Atu3539 and Atu3540 are separated by 50 nucleotides
Atu3536: Atu3536 - ABC transporter permease, at 585,679 to 587,220
Atu3536
Atu3537: Atu3537 - hypothetical protein, at 587,224 to 587,433
Atu3537
Atu3538: Atu3538 - hypothetical protein, at 587,569 to 588,084
Atu3538
Atu3539: Atu3539 - hypothetical protein, at 588,115 to 588,672
Atu3539
Atu3540: Atu3540 - hypothetical protein, at 588,723 to 589,361
Atu3540
Position (kb) 587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 586.615 kb on - strand, within Atu3536 at 586.634 kb on + strand, within Atu3536 at 586.673 kb on + strand, within Atu3536 at 586.701 kb on + strand, within Atu3536 at 586.735 kb on + strand, within Atu3536 at 586.735 kb on + strand, within Atu3536 at 586.735 kb on + strand, within Atu3536 at 586.761 kb on - strand, within Atu3536 at 586.853 kb on + strand, within Atu3536 at 586.853 kb on + strand, within Atu3536 at 586.853 kb on - strand, within Atu3536 at 586.968 kb on - strand, within Atu3536 at 586.983 kb on + strand, within Atu3536 at 587.101 kb on + strand at 587.101 kb on + strand at 587.109 kb on - strand at 587.109 kb on - strand at 587.113 kb on + strand at 587.113 kb on + strand at 587.114 kb on - strand at 587.121 kb on - strand at 587.121 kb on - strand at 587.174 kb on - strand at 587.183 kb on + strand at 587.183 kb on + strand at 587.183 kb on + strand at 587.191 kb on - strand at 587.202 kb on - strand at 587.215 kb on + strand at 587.220 kb on + strand at 587.221 kb on - strand at 587.287 kb on - strand, within Atu3537 at 587.461 kb on - strand at 588.104 kb on + strand at 588.118 kb on + strand at 588.191 kb on + strand, within Atu3539 at 588.361 kb on + strand, within Atu3539 at 588.380 kb on + strand, within Atu3539 at 588.380 kb on + strand, within Atu3539 at 588.456 kb on - strand, within Atu3539 at 588.461 kb on - strand, within Atu3539 at 588.547 kb on + strand, within Atu3539 at 588.570 kb on + strand, within Atu3539 at 588.619 kb on - strand at 588.619 kb on - strand at 588.619 kb on - strand at 588.621 kb on - strand at 588.621 kb on - strand at 588.797 kb on + strand, within Atu3540 at 588.797 kb on + strand, within Atu3540 at 588.799 kb on + strand, within Atu3540 at 588.807 kb on - strand, within Atu3540 at 588.807 kb on - strand, within Atu3540 at 588.832 kb on + strand, within Atu3540 at 588.835 kb on - strand, within Atu3540 at 588.840 kb on - strand, within Atu3540 at 588.847 kb on + strand, within Atu3540 at 589.044 kb on - strand, within Atu3540 at 589.069 kb on + strand, within Atu3540 at 589.069 kb on + strand, within Atu3540
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 586,615 - Atu3536 0.61 -0.0 586,634 + Atu3536 0.62 +0.5 586,673 + Atu3536 0.64 +0.1 586,701 + Atu3536 0.66 +1.4 586,735 + Atu3536 0.68 -0.2 586,735 + Atu3536 0.68 +0.5 586,735 + Atu3536 0.68 -0.8 586,761 - Atu3536 0.70 -0.7 586,853 + Atu3536 0.76 -0.8 586,853 + Atu3536 0.76 +0.4 586,853 - Atu3536 0.76 +0.0 586,968 - Atu3536 0.84 -0.6 586,983 + Atu3536 0.85 -1.3 587,101 + -0.6 587,101 + +0.7 587,109 - -1.4 587,109 - -0.0 587,113 + +0.2 587,113 + +0.7 587,114 - -1.0 587,121 - -0.2 587,121 - +0.0 587,174 - -0.6 587,183 + -0.0 587,183 + +1.6 587,183 + +0.1 587,191 - -0.0 587,202 - -0.4 587,215 + +0.4 587,220 + +1.8 587,221 - -0.3 587,287 - Atu3537 0.30 +1.4 587,461 - -0.9 588,104 + -0.0 588,118 + +1.4 588,191 + Atu3539 0.14 +0.2 588,361 + Atu3539 0.44 -1.6 588,380 + Atu3539 0.47 -0.2 588,380 + Atu3539 0.47 +0.6 588,456 - Atu3539 0.61 +0.0 588,461 - Atu3539 0.62 +0.2 588,547 + Atu3539 0.77 -0.1 588,570 + Atu3539 0.82 +0.4 588,619 - -2.8 588,619 - +0.4 588,619 - -0.2 588,621 - -0.2 588,621 - -0.1 588,797 + Atu3540 0.12 +0.6 588,797 + Atu3540 0.12 -0.4 588,799 + Atu3540 0.12 +0.8 588,807 - Atu3540 0.13 -1.4 588,807 - Atu3540 0.13 -0.1 588,832 + Atu3540 0.17 +1.3 588,835 - Atu3540 0.18 +0.6 588,840 - Atu3540 0.18 +0.0 588,847 + Atu3540 0.19 -0.9 589,044 - Atu3540 0.50 -0.2 589,069 + Atu3540 0.54 +2.4 589,069 + Atu3540 0.54 -0.1
Or see this region's nucleotide sequence