Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3198 and Atu3199 are separated by 72 nucleotides Atu3199 and Atu3200 are separated by 52 nucleotides
Atu3198: Atu3198 - ribose ABC transporter substrate-binding protein, at 206,885 to 207,838
Atu3198
Atu3199: Atu3199 - ribose ABC transporter permease, at 207,911 to 208,912
Atu3199
Atu3200: Atu3200 - ribose ABC transporter ATPase, at 208,965 to 210,488
Atu3200
Position (kb) 207
208
209 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 206.957 kb on - strand at 207.183 kb on + strand, within Atu3198 at 207.183 kb on + strand, within Atu3198 at 207.224 kb on - strand, within Atu3198 at 207.295 kb on + strand, within Atu3198 at 207.297 kb on + strand, within Atu3198 at 207.428 kb on - strand, within Atu3198 at 207.536 kb on - strand, within Atu3198 at 207.603 kb on + strand, within Atu3198 at 207.640 kb on - strand, within Atu3198 at 207.652 kb on + strand, within Atu3198 at 207.886 kb on + strand at 207.889 kb on - strand at 207.894 kb on - strand at 207.967 kb on + strand at 208.075 kb on - strand, within Atu3199 at 208.079 kb on - strand, within Atu3199 at 208.145 kb on + strand, within Atu3199 at 208.158 kb on - strand, within Atu3199 at 208.202 kb on - strand, within Atu3199 at 208.287 kb on + strand, within Atu3199 at 208.306 kb on - strand, within Atu3199 at 208.308 kb on + strand, within Atu3199 at 208.313 kb on + strand, within Atu3199 at 208.425 kb on - strand, within Atu3199 at 208.577 kb on - strand, within Atu3199 at 208.587 kb on + strand, within Atu3199 at 208.621 kb on - strand, within Atu3199 at 208.684 kb on + strand, within Atu3199 at 208.701 kb on - strand, within Atu3199 at 208.855 kb on + strand at 208.855 kb on + strand at 208.863 kb on - strand at 208.864 kb on + strand at 208.872 kb on - strand at 208.910 kb on - strand at 208.934 kb on + strand at 209.104 kb on - strand at 209.161 kb on + strand, within Atu3200 at 209.259 kb on + strand, within Atu3200 at 209.341 kb on - strand, within Atu3200 at 209.428 kb on + strand, within Atu3200 at 209.436 kb on - strand, within Atu3200 at 209.436 kb on - strand, within Atu3200 at 209.446 kb on + strand, within Atu3200 at 209.487 kb on + strand, within Atu3200 at 209.572 kb on + strand, within Atu3200 at 209.580 kb on - strand, within Atu3200 at 209.582 kb on + strand, within Atu3200 at 209.696 kb on - strand, within Atu3200 at 209.728 kb on + strand, within Atu3200 at 209.728 kb on + strand, within Atu3200 at 209.736 kb on - strand, within Atu3200 at 209.886 kb on - strand, within Atu3200 at 209.910 kb on - strand, within Atu3200
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 206,957 - +0.1 207,183 + Atu3198 0.31 +0.3 207,183 + Atu3198 0.31 +0.5 207,224 - Atu3198 0.36 +0.4 207,295 + Atu3198 0.43 +0.6 207,297 + Atu3198 0.43 +1.0 207,428 - Atu3198 0.57 -0.3 207,536 - Atu3198 0.68 -1.9 207,603 + Atu3198 0.75 +1.3 207,640 - Atu3198 0.79 -1.0 207,652 + Atu3198 0.80 +0.2 207,886 + -1.1 207,889 - -0.8 207,894 - -0.0 207,967 + +0.5 208,075 - Atu3199 0.16 -0.5 208,079 - Atu3199 0.17 +3.2 208,145 + Atu3199 0.23 +0.1 208,158 - Atu3199 0.25 -0.2 208,202 - Atu3199 0.29 -0.3 208,287 + Atu3199 0.38 +0.1 208,306 - Atu3199 0.39 +0.4 208,308 + Atu3199 0.40 +0.7 208,313 + Atu3199 0.40 +0.5 208,425 - Atu3199 0.51 +0.4 208,577 - Atu3199 0.66 -1.1 208,587 + Atu3199 0.67 +0.6 208,621 - Atu3199 0.71 -0.9 208,684 + Atu3199 0.77 +0.9 208,701 - Atu3199 0.79 -0.5 208,855 + +0.9 208,855 + +0.0 208,863 - +5.2 208,864 + -0.7 208,872 - +2.0 208,910 - -1.6 208,934 + +0.8 209,104 - +0.5 209,161 + Atu3200 0.13 -0.4 209,259 + Atu3200 0.19 -1.5 209,341 - Atu3200 0.25 +1.3 209,428 + Atu3200 0.30 +0.1 209,436 - Atu3200 0.31 +0.1 209,436 - Atu3200 0.31 -0.1 209,446 + Atu3200 0.32 -2.1 209,487 + Atu3200 0.34 -0.7 209,572 + Atu3200 0.40 -0.8 209,580 - Atu3200 0.40 -1.4 209,582 + Atu3200 0.40 +2.1 209,696 - Atu3200 0.48 -0.3 209,728 + Atu3200 0.50 -0.4 209,728 + Atu3200 0.50 +0.6 209,736 - Atu3200 0.51 -0.6 209,886 - Atu3200 0.60 +0.8 209,910 - Atu3200 0.62 -1.6
Or see this region's nucleotide sequence