Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0701 and Atu0702 are separated by 276 nucleotides Atu0702 and Atu0703 are separated by 4 nucleotides Atu0703 and Atu0704 are separated by 15 nucleotides
Atu0701: Atu0701 - GGDEF family protein, at 701,073 to 702,425
Atu0701
Atu0702: Atu0702 - calcium-binding protein, regucalcin, at 702,702 to 703,589
Atu0702
Atu0703: Atu0703 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase, at 703,594 to 704,223
Atu0703
Atu0704: Atu0704 - 2-dehydro-3-deoxygalactonate kinase, at 704,239 to 705,153
Atu0704
Position (kb) 702
703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 701.746 kb on + strand, within Atu0701 at 701.885 kb on + strand, within Atu0701 at 701.888 kb on - strand, within Atu0701 at 701.888 kb on - strand, within Atu0701 at 701.893 kb on - strand, within Atu0701 at 701.903 kb on + strand, within Atu0701 at 702.038 kb on - strand, within Atu0701 at 702.087 kb on - strand, within Atu0701 at 702.125 kb on - strand, within Atu0701 at 702.126 kb on + strand, within Atu0701 at 702.148 kb on - strand, within Atu0701 at 702.161 kb on + strand, within Atu0701 at 702.161 kb on + strand, within Atu0701 at 702.161 kb on + strand, within Atu0701 at 702.169 kb on - strand, within Atu0701 at 702.335 kb on + strand at 702.343 kb on - strand at 702.440 kb on + strand at 702.516 kb on - strand at 702.596 kb on - strand at 702.625 kb on - strand at 702.709 kb on - strand at 702.724 kb on + strand at 702.764 kb on - strand at 702.947 kb on + strand, within Atu0702 at 702.992 kb on - strand, within Atu0702 at 703.028 kb on - strand, within Atu0702 at 703.083 kb on - strand, within Atu0702 at 703.083 kb on - strand, within Atu0702 at 703.107 kb on - strand, within Atu0702 at 703.170 kb on - strand, within Atu0702 at 703.231 kb on + strand, within Atu0702 at 703.376 kb on + strand, within Atu0702 at 703.483 kb on - strand, within Atu0702 at 703.590 kb on + strand at 703.658 kb on - strand, within Atu0703 at 703.678 kb on - strand, within Atu0703 at 703.858 kb on - strand, within Atu0703 at 704.131 kb on - strand, within Atu0703 at 704.336 kb on + strand, within Atu0704 at 704.336 kb on + strand, within Atu0704 at 704.358 kb on + strand, within Atu0704 at 704.474 kb on - strand, within Atu0704 at 704.484 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.571 kb on - strand, within Atu0704
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 701,746 + Atu0701 0.50 +0.1 701,885 + Atu0701 0.60 -0.3 701,888 - Atu0701 0.60 +0.4 701,888 - Atu0701 0.60 +0.4 701,893 - Atu0701 0.61 +0.9 701,903 + Atu0701 0.61 -0.1 702,038 - Atu0701 0.71 -0.9 702,087 - Atu0701 0.75 -0.2 702,125 - Atu0701 0.78 -0.4 702,126 + Atu0701 0.78 +0.7 702,148 - Atu0701 0.79 +5.8 702,161 + Atu0701 0.80 +0.3 702,161 + Atu0701 0.80 -0.3 702,161 + Atu0701 0.80 -0.1 702,169 - Atu0701 0.81 +0.5 702,335 + +1.5 702,343 - -1.0 702,440 + -1.3 702,516 - -0.2 702,596 - -0.1 702,625 - -0.3 702,709 - +0.1 702,724 + +0.0 702,764 - -0.1 702,947 + Atu0702 0.28 -0.1 702,992 - Atu0702 0.33 -1.0 703,028 - Atu0702 0.37 -0.9 703,083 - Atu0702 0.43 -1.7 703,083 - Atu0702 0.43 +0.1 703,107 - Atu0702 0.46 +0.9 703,170 - Atu0702 0.53 -0.5 703,231 + Atu0702 0.60 -0.6 703,376 + Atu0702 0.76 +0.6 703,483 - Atu0702 0.88 -0.1 703,590 + +0.8 703,658 - Atu0703 0.10 -1.1 703,678 - Atu0703 0.13 -1.5 703,858 - Atu0703 0.42 -2.9 704,131 - Atu0703 0.85 -0.8 704,336 + Atu0704 0.11 -0.6 704,336 + Atu0704 0.11 +1.8 704,358 + Atu0704 0.13 -0.4 704,474 - Atu0704 0.26 +0.3 704,484 - Atu0704 0.27 -0.9 704,541 - Atu0704 0.33 +0.2 704,541 - Atu0704 0.33 +0.4 704,571 - Atu0704 0.36 -0.9
Or see this region's nucleotide sequence