Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0644 and Atu0645 are separated by 232 nucleotides Atu0645 and Atu0646 are separated by 53 nucleotides Atu0646 and Atu8084 are separated by 324 nucleotides Atu8084 and Atu0647 are separated by 155 nucleotides
Atu0644: Atu0644 - glycyl-tRNA synthetase, beta chain, at 631,738 to 633,891
Atu0644
Atu0645: Atu0645 - hypothetical protein, at 634,124 to 634,618
Atu0645
Atu0646: Atu0646 - methyl-accepting chemotaxis protein A, at 634,672 to 636,495
Atu0646
Atu8084: Atu8084 - hypothetical protein, at 636,820 to 637,329
Atu8084
Atu0647: Atu0647 - phosphoribosylamine--glycine ligase, at 637,485 to 638,756
Atu0647
Position (kb) 634
635
636
637 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 633.938 kb on + strand at 633.938 kb on + strand at 633.938 kb on + strand at 633.946 kb on - strand at 633.946 kb on - strand at 633.946 kb on - strand at 633.959 kb on - strand at 634.002 kb on + strand at 634.075 kb on + strand at 634.075 kb on + strand at 634.215 kb on + strand, within Atu0645 at 634.240 kb on + strand, within Atu0645 at 634.665 kb on + strand at 634.683 kb on - strand at 634.700 kb on + strand at 634.700 kb on + strand at 634.710 kb on + strand at 634.763 kb on + strand at 634.824 kb on - strand at 634.827 kb on - strand at 634.871 kb on + strand, within Atu0646 at 634.871 kb on + strand, within Atu0646 at 634.879 kb on - strand, within Atu0646 at 635.031 kb on + strand, within Atu0646 at 635.116 kb on + strand, within Atu0646 at 635.163 kb on + strand, within Atu0646 at 635.219 kb on - strand, within Atu0646 at 635.268 kb on + strand, within Atu0646 at 635.409 kb on + strand, within Atu0646 at 635.409 kb on + strand, within Atu0646 at 635.456 kb on + strand, within Atu0646 at 635.470 kb on - strand, within Atu0646 at 635.536 kb on - strand, within Atu0646 at 635.573 kb on - strand, within Atu0646 at 635.662 kb on + strand, within Atu0646 at 635.739 kb on + strand, within Atu0646 at 635.739 kb on - strand, within Atu0646 at 635.924 kb on - strand, within Atu0646 at 635.953 kb on - strand, within Atu0646 at 636.002 kb on - strand, within Atu0646 at 636.014 kb on - strand, within Atu0646 at 636.018 kb on + strand, within Atu0646 at 636.026 kb on - strand, within Atu0646 at 636.068 kb on - strand, within Atu0646 at 636.068 kb on - strand, within Atu0646 at 636.078 kb on - strand, within Atu0646 at 636.104 kb on + strand, within Atu0646 at 636.104 kb on + strand, within Atu0646 at 636.112 kb on - strand, within Atu0646 at 636.122 kb on - strand, within Atu0646 at 636.136 kb on - strand, within Atu0646 at 636.152 kb on + strand, within Atu0646 at 636.423 kb on - strand at 636.461 kb on - strand at 636.532 kb on - strand at 636.560 kb on + strand at 636.560 kb on + strand at 636.568 kb on - strand at 636.596 kb on - strand at 636.835 kb on + strand at 636.979 kb on - strand, within Atu8084 at 637.002 kb on - strand, within Atu8084 at 637.013 kb on + strand, within Atu8084 at 637.013 kb on - strand, within Atu8084 at 637.161 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.176 kb on - strand, within Atu8084 at 637.176 kb on - strand, within Atu8084 at 637.291 kb on + strand at 637.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 633,938 + +0.2 633,938 + +0.0 633,938 + -1.0 633,946 - +0.3 633,946 - +0.0 633,946 - -0.1 633,959 - -0.0 634,002 + -1.0 634,075 + -0.9 634,075 + -0.8 634,215 + Atu0645 0.18 -1.7 634,240 + Atu0645 0.23 +1.2 634,665 + -1.9 634,683 - +0.5 634,700 + -1.3 634,700 + -0.7 634,710 + -1.5 634,763 + +0.2 634,824 - +3.4 634,827 - +0.6 634,871 + Atu0646 0.11 +0.1 634,871 + Atu0646 0.11 -0.3 634,879 - Atu0646 0.11 +0.3 635,031 + Atu0646 0.20 -0.5 635,116 + Atu0646 0.24 -0.8 635,163 + Atu0646 0.27 -0.6 635,219 - Atu0646 0.30 +0.4 635,268 + Atu0646 0.33 -0.3 635,409 + Atu0646 0.40 +1.4 635,409 + Atu0646 0.40 +0.7 635,456 + Atu0646 0.43 +0.1 635,470 - Atu0646 0.44 +0.4 635,536 - Atu0646 0.47 +0.1 635,573 - Atu0646 0.49 +0.3 635,662 + Atu0646 0.54 +1.0 635,739 + Atu0646 0.58 +0.4 635,739 - Atu0646 0.58 +0.4 635,924 - Atu0646 0.69 +0.6 635,953 - Atu0646 0.70 +0.6 636,002 - Atu0646 0.73 +0.5 636,014 - Atu0646 0.74 -0.6 636,018 + Atu0646 0.74 +0.7 636,026 - Atu0646 0.74 +0.7 636,068 - Atu0646 0.77 +0.4 636,068 - Atu0646 0.77 +1.1 636,078 - Atu0646 0.77 +1.1 636,104 + Atu0646 0.79 +0.8 636,104 + Atu0646 0.79 +0.4 636,112 - Atu0646 0.79 +1.4 636,122 - Atu0646 0.79 -1.4 636,136 - Atu0646 0.80 +0.9 636,152 + Atu0646 0.81 -0.3 636,423 - -0.7 636,461 - +0.7 636,532 - -2.2 636,560 + -0.7 636,560 + -0.4 636,568 - +0.6 636,596 - +0.4 636,835 + +0.7 636,979 - Atu8084 0.31 -0.6 637,002 - Atu8084 0.36 -0.5 637,013 + Atu8084 0.38 -0.0 637,013 - Atu8084 0.38 +0.8 637,161 + Atu8084 0.67 +0.7 637,163 + Atu8084 0.67 +0.7 637,163 + Atu8084 0.67 +0.6 637,163 + Atu8084 0.67 -0.1 637,163 + Atu8084 0.67 +1.3 637,163 + Atu8084 0.67 +0.4 637,171 - Atu8084 0.69 +2.0 637,171 - Atu8084 0.69 +0.7 637,171 - Atu8084 0.69 -0.3 637,171 - Atu8084 0.69 -2.0 637,176 - Atu8084 0.70 -1.3 637,176 - Atu8084 0.70 +0.2 637,291 + +0.1 637,470 + +0.6
Or see this region's nucleotide sequence