Strain Fitness in Agrobacterium fabrum C58 around Atu0209

Experiment: Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0208 and Atu0209 are separated by 290 nucleotidesAtu0209 and Atu0210 are separated by 364 nucleotidesAtu0210 and Atu0211 are separated by 18 nucleotides Atu0208: Atu0208 - hypothetical protein, at 212,655 to 213,491 Atu0208 Atu0209: Atu0209 - hypothetical protein, at 213,782 to 214,888 Atu0209 Atu0210: Atu0210 - hypothetical protein, at 215,253 to 215,597 Atu0210 Atu0211: Atu0211 - hypothetical protein, at 215,616 to 216,467 Atu0211 Position (kb) 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 212.795 kb on - strand, within Atu0208at 212.871 kb on + strand, within Atu0208at 213.010 kb on + strand, within Atu0208at 213.015 kb on + strand, within Atu0208at 213.015 kb on + strand, within Atu0208at 213.015 kb on + strand, within Atu0208at 213.020 kb on + strand, within Atu0208at 213.052 kb on + strand, within Atu0208at 213.167 kb on - strand, within Atu0208at 213.201 kb on + strand, within Atu0208at 213.209 kb on - strand, within Atu0208at 213.225 kb on - strand, within Atu0208at 213.234 kb on + strand, within Atu0208at 213.241 kb on + strand, within Atu0208at 213.271 kb on + strand, within Atu0208at 213.271 kb on + strand, within Atu0208at 213.295 kb on + strand, within Atu0208at 213.318 kb on + strand, within Atu0208at 213.318 kb on - strand, within Atu0208at 213.323 kb on + strand, within Atu0208at 213.326 kb on - strand, within Atu0208at 213.388 kb on + strand, within Atu0208at 213.393 kb on + strand, within Atu0208at 213.396 kb on - strand, within Atu0208at 213.477 kb on + strandat 213.485 kb on + strandat 213.485 kb on + strandat 213.493 kb on - strandat 213.499 kb on + strandat 213.499 kb on + strandat 213.504 kb on + strandat 213.642 kb on - strandat 213.699 kb on - strandat 213.736 kb on - strandat 213.845 kb on + strandat 213.942 kb on + strand, within Atu0209at 213.961 kb on - strand, within Atu0209at 213.985 kb on + strand, within Atu0209at 214.157 kb on + strand, within Atu0209at 214.192 kb on + strand, within Atu0209at 214.213 kb on + strand, within Atu0209at 214.296 kb on - strand, within Atu0209at 214.312 kb on - strand, within Atu0209at 214.388 kb on + strand, within Atu0209at 214.427 kb on + strand, within Atu0209at 214.435 kb on - strand, within Atu0209at 214.435 kb on - strand, within Atu0209at 214.492 kb on - strand, within Atu0209at 214.562 kb on + strand, within Atu0209at 214.586 kb on + strand, within Atu0209at 214.594 kb on - strand, within Atu0209at 214.666 kb on + strand, within Atu0209at 214.676 kb on - strand, within Atu0209at 214.700 kb on - strand, within Atu0209at 214.700 kb on - strand, within Atu0209at 214.718 kb on + strand, within Atu0209at 214.718 kb on + strand, within Atu0209at 214.726 kb on - strand, within Atu0209at 214.726 kb on - strand, within Atu0209at 214.750 kb on + strand, within Atu0209at 214.753 kb on - strand, within Atu0209at 214.760 kb on - strand, within Atu0209at 214.771 kb on + strand, within Atu0209at 214.779 kb on - strandat 214.796 kb on + strandat 214.804 kb on - strandat 214.883 kb on - strandat 215.076 kb on - strandat 215.088 kb on + strandat 215.088 kb on + strandat 215.096 kb on - strandat 215.096 kb on - strandat 215.130 kb on - strandat 215.147 kb on + strandat 215.154 kb on + strandat 215.155 kb on - strandat 215.155 kb on - strandat 215.155 kb on - strandat 215.162 kb on - strandat 215.186 kb on + strandat 215.190 kb on + strandat 215.214 kb on + strandat 215.236 kb on + strandat 215.249 kb on - strandat 215.287 kb on - strandat 215.289 kb on - strand, within Atu0210at 215.298 kb on + strand, within Atu0210at 215.310 kb on + strand, within Atu0210at 215.315 kb on + strand, within Atu0210at 215.333 kb on + strand, within Atu0210at 215.334 kb on + strand, within Atu0210at 215.342 kb on - strand, within Atu0210at 215.451 kb on + strand, within Atu0210at 215.458 kb on + strand, within Atu0210at 215.466 kb on - strand, within Atu0210at 215.620 kb on - strandat 215.640 kb on - strandat 215.650 kb on - strandat 215.652 kb on + strandat 215.655 kb on - strandat 215.677 kb on + strandat 215.685 kb on - strandat 215.685 kb on - strandat 215.720 kb on + strand, within Atu0211at 215.732 kb on + strand, within Atu0211at 215.769 kb on + strand, within Atu0211at 215.781 kb on + strand, within Atu0211at 215.786 kb on + strand, within Atu0211at 215.855 kb on - strand, within Atu0211

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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212,795 - Atu0208 0.17 -0.8
212,871 + Atu0208 0.26 +0.2
213,010 + Atu0208 0.42 -0.2
213,015 + Atu0208 0.43 -0.5
213,015 + Atu0208 0.43 +0.4
213,015 + Atu0208 0.43 +0.9
213,020 + Atu0208 0.44 -2.3
213,052 + Atu0208 0.47 -0.2
213,167 - Atu0208 0.61 +1.1
213,201 + Atu0208 0.65 -0.2
213,209 - Atu0208 0.66 +0.0
213,225 - Atu0208 0.68 +0.0
213,234 + Atu0208 0.69 +1.0
213,241 + Atu0208 0.70 -0.4
213,271 + Atu0208 0.74 +3.6
213,271 + Atu0208 0.74 +0.7
213,295 + Atu0208 0.76 +0.8
213,318 + Atu0208 0.79 +0.1
213,318 - Atu0208 0.79 -0.9
213,323 + Atu0208 0.80 -0.3
213,326 - Atu0208 0.80 +0.5
213,388 + Atu0208 0.88 +1.9
213,393 + Atu0208 0.88 +0.1
213,396 - Atu0208 0.89 -0.5
213,477 + +0.5
213,485 + +0.3
213,485 + -0.2
213,493 - -0.4
213,499 + -0.6
213,499 + -0.4
213,504 + +0.0
213,642 - +0.1
213,699 - +0.5
213,736 - +0.2
213,845 + -1.8
213,942 + Atu0209 0.14 -2.5
213,961 - Atu0209 0.16 -1.2
213,985 + Atu0209 0.18 +0.2
214,157 + Atu0209 0.34 -0.3
214,192 + Atu0209 0.37 -0.2
214,213 + Atu0209 0.39 -0.6
214,296 - Atu0209 0.46 +1.9
214,312 - Atu0209 0.48 -0.0
214,388 + Atu0209 0.55 -1.3
214,427 + Atu0209 0.58 -0.2
214,435 - Atu0209 0.59 +0.2
214,435 - Atu0209 0.59 +0.1
214,492 - Atu0209 0.64 +4.2
214,562 + Atu0209 0.70 -0.4
214,586 + Atu0209 0.73 -0.4
214,594 - Atu0209 0.73 +2.4
214,666 + Atu0209 0.80 -1.0
214,676 - Atu0209 0.81 +0.3
214,700 - Atu0209 0.83 +2.1
214,700 - Atu0209 0.83 -0.6
214,718 + Atu0209 0.85 +0.1
214,718 + Atu0209 0.85 +0.7
214,726 - Atu0209 0.85 +1.7
214,726 - Atu0209 0.85 +0.1
214,750 + Atu0209 0.87 +0.2
214,753 - Atu0209 0.88 -0.5
214,760 - Atu0209 0.88 +0.0
214,771 + Atu0209 0.89 -0.0
214,779 - +0.9
214,796 + -1.9
214,804 - -0.1
214,883 - -0.3
215,076 - -0.3
215,088 + +0.6
215,088 + +0.4
215,096 - +0.1
215,096 - -0.7
215,130 - +0.2
215,147 + -0.2
215,154 + -1.0
215,155 - +0.1
215,155 - -0.1
215,155 - +0.0
215,162 - -0.8
215,186 + +0.9
215,190 + -0.0
215,214 + +1.2
215,236 + +1.6
215,249 - -1.2
215,287 - -0.2
215,289 - Atu0210 0.10 +0.7
215,298 + Atu0210 0.13 -0.2
215,310 + Atu0210 0.17 +0.5
215,315 + Atu0210 0.18 -0.3
215,333 + Atu0210 0.23 -0.8
215,334 + Atu0210 0.23 -0.1
215,342 - Atu0210 0.26 +0.2
215,451 + Atu0210 0.57 +1.2
215,458 + Atu0210 0.59 -0.6
215,466 - Atu0210 0.62 -1.0
215,620 - -0.1
215,640 - -0.8
215,650 - -0.4
215,652 + -2.0
215,655 - -0.6
215,677 + -0.6
215,685 - -1.2
215,685 - -1.8
215,720 + Atu0211 0.12 -1.7
215,732 + Atu0211 0.14 -0.4
215,769 + Atu0211 0.18 -0.2
215,781 + Atu0211 0.19 -1.1
215,786 + Atu0211 0.20 -1.1
215,855 - Atu0211 0.28 -0.6

Or see this region's nucleotide sequence