Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3803 and PP_3804 overlap by 4 nucleotides PP_3804 and PP_3805 are separated by 83 nucleotides PP_3805 and PP_3806 are separated by 26 nucleotides PP_3806 and PP_3807 are separated by 56 nucleotides
PP_3803: PP_3803 - putative Cation ABC transporter, permease protein, at 4,331,301 to 4,332,200
_3803
PP_3804: PP_3804 - conserved exported protein of unknown function, at 4,332,197 to 4,333,060
_3804
PP_3805: PP_3805 - lipoprotein required for swarming, at 4,333,144 to 4,334,196
_3805
PP_3806: PP_3806 - Hydrolase, isochorismatase family, at 4,334,223 to 4,334,774
_3806
PP_3807: PP_3807 - Thioesterase, at 4,334,831 to 4,335,550
_3807
Position (kb) 4333
4334
4335 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.579 kb on - strand, within PP_3804 at 4332.579 kb on - strand, within PP_3804 at 4332.588 kb on - strand, within PP_3804 at 4332.588 kb on - strand, within PP_3804 at 4332.794 kb on + strand, within PP_3804 at 4333.017 kb on + strand at 4333.017 kb on + strand at 4333.017 kb on + strand at 4333.018 kb on - strand at 4333.166 kb on + strand at 4333.167 kb on - strand at 4333.372 kb on - strand, within PP_3805 at 4333.372 kb on - strand, within PP_3805 at 4333.554 kb on - strand, within PP_3805 at 4333.568 kb on + strand, within PP_3805 at 4333.568 kb on + strand, within PP_3805 at 4333.568 kb on + strand, within PP_3805 at 4333.569 kb on - strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.608 kb on - strand, within PP_3805 at 4333.608 kb on - strand, within PP_3805 at 4333.608 kb on - strand, within PP_3805 at 4333.661 kb on + strand, within PP_3805 at 4333.787 kb on + strand, within PP_3805 at 4333.787 kb on + strand, within PP_3805 at 4333.838 kb on + strand, within PP_3805 at 4333.838 kb on + strand, within PP_3805 at 4333.896 kb on + strand, within PP_3805 at 4333.896 kb on + strand, within PP_3805 at 4333.897 kb on - strand, within PP_3805 at 4333.897 kb on - strand, within PP_3805 at 4334.102 kb on - strand at 4334.245 kb on + strand at 4334.322 kb on + strand, within PP_3806 at 4334.322 kb on + strand, within PP_3806 at 4334.322 kb on + strand, within PP_3806 at 4334.575 kb on - strand, within PP_3806 at 4334.801 kb on + strand at 4335.051 kb on + strand, within PP_3807 at 4335.051 kb on + strand, within PP_3807 at 4335.051 kb on + strand, within PP_3807 at 4335.052 kb on - strand, within PP_3807 at 4335.052 kb on - strand, within PP_3807
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 4,332,578 + PP_3804 0.44 -1.1 4,332,578 + PP_3804 0.44 -0.3 4,332,578 + PP_3804 0.44 +1.2 4,332,578 + PP_3804 0.44 +0.6 4,332,578 + PP_3804 0.44 +0.1 4,332,578 + PP_3804 0.44 +0.4 4,332,578 + PP_3804 0.44 +1.2 4,332,579 - PP_3804 0.44 -0.4 4,332,579 - PP_3804 0.44 +0.9 4,332,588 - PP_3804 0.45 +1.3 4,332,588 - PP_3804 0.45 -0.7 4,332,794 + PP_3804 0.69 -0.9 4,333,017 + +1.6 4,333,017 + -0.2 4,333,017 + -3.7 4,333,018 - -1.2 4,333,166 + +0.6 4,333,167 - +1.4 4,333,372 - PP_3805 0.22 -3.5 4,333,372 - PP_3805 0.22 -0.4 4,333,554 - PP_3805 0.39 -0.5 4,333,568 + PP_3805 0.40 -0.4 4,333,568 + PP_3805 0.40 +0.8 4,333,568 + PP_3805 0.40 +0.4 4,333,569 - PP_3805 0.40 -0.2 4,333,607 + PP_3805 0.44 -3.5 4,333,607 + PP_3805 0.44 -3.3 4,333,607 + PP_3805 0.44 -0.0 4,333,607 + PP_3805 0.44 -0.1 4,333,608 - PP_3805 0.44 -0.7 4,333,608 - PP_3805 0.44 +1.0 4,333,608 - PP_3805 0.44 -2.3 4,333,661 + PP_3805 0.49 -0.7 4,333,787 + PP_3805 0.61 -3.6 4,333,787 + PP_3805 0.61 -0.5 4,333,838 + PP_3805 0.66 +0.3 4,333,838 + PP_3805 0.66 +0.0 4,333,896 + PP_3805 0.71 -3.3 4,333,896 + PP_3805 0.71 +0.3 4,333,897 - PP_3805 0.72 -0.7 4,333,897 - PP_3805 0.72 +0.1 4,334,102 - +0.2 4,334,245 + -1.9 4,334,322 + PP_3806 0.18 +0.4 4,334,322 + PP_3806 0.18 -0.1 4,334,322 + PP_3806 0.18 -1.3 4,334,575 - PP_3806 0.64 +0.1 4,334,801 + +0.6 4,335,051 + PP_3807 0.31 +0.9 4,335,051 + PP_3807 0.31 +0.5 4,335,051 + PP_3807 0.31 -2.3 4,335,052 - PP_3807 0.31 -1.3 4,335,052 - PP_3807 0.31 -2.1
Or see this region's nucleotide sequence