Strain Fitness in Pseudomonas putida KT2440 around PP_0570

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0569 and PP_0570 are separated by 180 nucleotidesPP_0570 and PP_0571 are separated by 151 nucleotidesPP_0571 and PP_0572 are separated by 35 nucleotides PP_0569: PP_0569 - MATE efflux family protein, at 661,617 to 662,954 _0569 PP_0570: PP_0570 - lipoprotein of unknown function, at 663,135 to 668,036 _0570 PP_0571: PP_0571 - conserved membrane protein of unknown function, at 668,188 to 668,523 _0571 PP_0572: PP_0572 - peptidoglycan glycosyltransferase, at 668,559 to 670,913 _0572 Position (kb) 663 664 665 666 667 668 669Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 662.172 kb on - strand, within PP_0569at 662.204 kb on + strand, within PP_0569at 662.291 kb on - strand, within PP_0569at 662.406 kb on + strand, within PP_0569at 662.406 kb on + strand, within PP_0569at 662.406 kb on + strand, within PP_0569at 662.407 kb on - strand, within PP_0569at 662.407 kb on - strand, within PP_0569at 662.500 kb on + strand, within PP_0569at 663.012 kb on + strandat 663.012 kb on + strandat 663.012 kb on + strandat 663.032 kb on - strandat 663.089 kb on + strandat 663.089 kb on + strandat 663.090 kb on - strandat 663.090 kb on - strandat 663.090 kb on - strandat 663.091 kb on + strandat 663.091 kb on + strandat 663.092 kb on - strandat 663.092 kb on - strandat 663.092 kb on - strandat 663.092 kb on - strandat 663.092 kb on - strandat 663.108 kb on + strandat 663.129 kb on + strandat 663.129 kb on + strandat 663.130 kb on - strandat 663.230 kb on + strandat 663.230 kb on + strandat 663.230 kb on + strandat 663.230 kb on + strandat 663.231 kb on - strandat 663.775 kb on - strand, within PP_0570at 663.775 kb on - strand, within PP_0570at 663.777 kb on + strand, within PP_0570at 663.777 kb on + strand, within PP_0570at 663.777 kb on + strand, within PP_0570at 663.777 kb on + strand, within PP_0570at 663.778 kb on - strand, within PP_0570at 663.778 kb on - strand, within PP_0570at 663.778 kb on - strand, within PP_0570at 663.778 kb on - strand, within PP_0570at 663.780 kb on + strand, within PP_0570at 663.780 kb on + strand, within PP_0570at 663.915 kb on + strand, within PP_0570at 663.945 kb on + strand, within PP_0570at 663.945 kb on + strand, within PP_0570at 663.946 kb on - strand, within PP_0570at 664.193 kb on + strand, within PP_0570at 664.193 kb on + strand, within PP_0570at 664.193 kb on + strand, within PP_0570at 664.193 kb on + strand, within PP_0570at 664.194 kb on - strand, within PP_0570at 664.194 kb on - strand, within PP_0570at 664.303 kb on - strand, within PP_0570at 664.452 kb on + strand, within PP_0570at 664.452 kb on + strand, within PP_0570at 664.453 kb on - strand, within PP_0570at 664.459 kb on - strand, within PP_0570at 664.540 kb on - strand, within PP_0570at 664.540 kb on - strand, within PP_0570at 664.650 kb on + strand, within PP_0570at 664.656 kb on + strandat 664.656 kb on + strand, within PP_0570at 664.656 kb on + strand, within PP_0570at 664.657 kb on - strand, within PP_0570at 664.657 kb on - strand, within PP_0570at 664.657 kb on - strand, within PP_0570at 664.657 kb on - strand, within PP_0570at 664.657 kb on - strand, within PP_0570at 664.698 kb on + strand, within PP_0570at 664.699 kb on - strand, within PP_0570at 664.699 kb on - strand, within PP_0570at 664.702 kb on + strand, within PP_0570at 664.702 kb on + strand, within PP_0570at 664.702 kb on + strand, within PP_0570at 664.702 kb on + strand, within PP_0570at 664.703 kb on - strand, within PP_0570at 664.703 kb on - strand, within PP_0570at 664.740 kb on + strand, within PP_0570at 664.937 kb on + strand, within PP_0570at 664.938 kb on - strand, within PP_0570at 664.938 kb on - strand, within PP_0570at 664.938 kb on - strand, within PP_0570at 665.103 kb on + strand, within PP_0570at 665.113 kb on - strand, within PP_0570at 665.136 kb on + strandat 665.137 kb on - strand, within PP_0570at 665.142 kb on + strand, within PP_0570at 665.373 kb on + strand, within PP_0570at 665.373 kb on + strand, within PP_0570at 665.373 kb on + strand, within PP_0570at 665.545 kb on - strand, within PP_0570at 665.545 kb on - strand, within PP_0570at 665.545 kb on - strand, within PP_0570at 665.710 kb on + strand, within PP_0570at 665.844 kb on + strand, within PP_0570at 665.844 kb on + strand, within PP_0570at 665.845 kb on - strand, within PP_0570at 665.845 kb on - strand, within PP_0570at 665.845 kb on - strand, within PP_0570at 665.868 kb on + strand, within PP_0570at 665.868 kb on + strand, within PP_0570at 665.869 kb on - strand, within PP_0570at 665.869 kb on - strand, within PP_0570at 665.963 kb on + strand, within PP_0570at 665.963 kb on + strand, within PP_0570at 665.964 kb on - strand, within PP_0570at 665.964 kb on - strand, within PP_0570at 665.964 kb on - strand, within PP_0570at 665.968 kb on + strand, within PP_0570at 665.974 kb on + strand, within PP_0570at 665.974 kb on + strand, within PP_0570at 665.974 kb on + strand, within PP_0570at 665.975 kb on - strand, within PP_0570at 665.975 kb on - strand, within PP_0570at 665.975 kb on - strand, within PP_0570at 665.975 kb on - strand, within PP_0570at 666.029 kb on + strand, within PP_0570at 666.182 kb on + strand, within PP_0570at 666.454 kb on - strand, within PP_0570at 666.454 kb on - strand, within PP_0570at 666.618 kb on + strand, within PP_0570at 666.624 kb on + strand, within PP_0570at 666.669 kb on + strand, within PP_0570at 666.777 kb on + strand, within PP_0570at 666.778 kb on - strand, within PP_0570at 666.822 kb on + strand, within PP_0570at 666.823 kb on - strand, within PP_0570at 666.837 kb on + strand, within PP_0570at 666.837 kb on + strand, within PP_0570at 666.837 kb on + strand, within PP_0570at 666.838 kb on - strand, within PP_0570at 666.838 kb on - strand, within PP_0570at 666.838 kb on - strand, within PP_0570at 666.876 kb on + strand, within PP_0570at 666.927 kb on + strand, within PP_0570at 667.179 kb on - strand, within PP_0570at 667.524 kb on + strand, within PP_0570at 667.524 kb on + strand, within PP_0570at 667.525 kb on - strand, within PP_0570at 667.602 kb on + strandat 667.602 kb on + strandat 667.602 kb on + strandat 667.603 kb on - strandat 667.610 kb on + strandat 667.611 kb on - strandat 667.849 kb on - strandat 667.861 kb on + strandat 667.864 kb on - strandat 667.891 kb on - strandat 667.891 kb on - strandat 667.912 kb on - strandat 667.942 kb on - strandat 667.942 kb on - strandat 668.282 kb on + strand, within PP_0571at 668.282 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strandat 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.570 kb on - strandat 668.771 kb on - strandat 668.817 kb on + strand, within PP_0572at 668.817 kb on + strand, within PP_0572at 668.836 kb on - strand, within PP_0572at 668.966 kb on + strand, within PP_0572at 668.992 kb on + strand, within PP_0572at 668.993 kb on - strand, within PP_0572at 668.993 kb on - strand, within PP_0572at 668.993 kb on - strand, within PP_0572

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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662,172 - PP_0569 0.41 +1.1
662,204 + PP_0569 0.44 -3.6
662,291 - PP_0569 0.50 -0.5
662,406 + PP_0569 0.59 -0.6
662,406 + PP_0569 0.59 -1.6
662,406 + PP_0569 0.59 -0.0
662,407 - PP_0569 0.59 -2.5
662,407 - PP_0569 0.59 +0.8
662,500 + PP_0569 0.66 -0.0
663,012 + +1.0
663,012 + -2.5
663,012 + +0.0
663,032 - -2.4
663,089 + +0.9
663,089 + +0.9
663,090 - +1.1
663,090 - -3.8
663,090 - -0.4
663,091 + +0.1
663,091 + -1.8
663,092 - -0.6
663,092 - +0.4
663,092 - -1.7
663,092 - +0.1
663,092 - -0.7
663,108 + -2.9
663,129 + -0.2
663,129 + -0.1
663,130 - +0.4
663,230 + -0.4
663,230 + -0.0
663,230 + +0.3
663,230 + +0.5
663,231 - -2.8
663,775 - PP_0570 0.13 -1.6
663,775 - PP_0570 0.13 +0.3
663,777 + PP_0570 0.13 -3.5
663,777 + PP_0570 0.13 +0.0
663,777 + PP_0570 0.13 -1.4
663,777 + PP_0570 0.13 -3.6
663,778 - PP_0570 0.13 -3.1
663,778 - PP_0570 0.13 -0.7
663,778 - PP_0570 0.13 -0.2
663,778 - PP_0570 0.13 +0.4
663,780 + PP_0570 0.13 -1.2
663,780 + PP_0570 0.13 -0.5
663,915 + PP_0570 0.16 -0.2
663,945 + PP_0570 0.17 -0.5
663,945 + PP_0570 0.17 -3.8
663,946 - PP_0570 0.17 -0.4
664,193 + PP_0570 0.22 -1.7
664,193 + PP_0570 0.22 -1.8
664,193 + PP_0570 0.22 -2.7
664,193 + PP_0570 0.22 +1.2
664,194 - PP_0570 0.22 -0.7
664,194 - PP_0570 0.22 +0.8
664,303 - PP_0570 0.24 +0.6
664,452 + PP_0570 0.27 +0.0
664,452 + PP_0570 0.27 +0.3
664,453 - PP_0570 0.27 -4.8
664,459 - PP_0570 0.27 +0.6
664,540 - PP_0570 0.29 -3.1
664,540 - PP_0570 0.29 -1.0
664,650 + PP_0570 0.31 -1.6
664,656 + -0.7
664,656 + PP_0570 0.31 +0.8
664,656 + PP_0570 0.31 -1.8
664,657 - PP_0570 0.31 +0.8
664,657 - PP_0570 0.31 -3.7
664,657 - PP_0570 0.31 -4.4
664,657 - PP_0570 0.31 +0.2
664,657 - PP_0570 0.31 +1.2
664,698 + PP_0570 0.32 -0.1
664,699 - PP_0570 0.32 +2.8
664,699 - PP_0570 0.32 +0.6
664,702 + PP_0570 0.32 -3.0
664,702 + PP_0570 0.32 +0.6
664,702 + PP_0570 0.32 +1.1
664,702 + PP_0570 0.32 -2.2
664,703 - PP_0570 0.32 -0.1
664,703 - PP_0570 0.32 -2.6
664,740 + PP_0570 0.33 -2.5
664,937 + PP_0570 0.37 -1.8
664,938 - PP_0570 0.37 +0.8
664,938 - PP_0570 0.37 -1.3
664,938 - PP_0570 0.37 -1.1
665,103 + PP_0570 0.40 -0.8
665,113 - PP_0570 0.40 -3.8
665,136 + +0.1
665,137 - PP_0570 0.41 -2.6
665,142 + PP_0570 0.41 -3.3
665,373 + PP_0570 0.46 -3.8
665,373 + PP_0570 0.46 -1.1
665,373 + PP_0570 0.46 -1.2
665,545 - PP_0570 0.49 +1.5
665,545 - PP_0570 0.49 +0.3
665,545 - PP_0570 0.49 -3.7
665,710 + PP_0570 0.53 -3.4
665,844 + PP_0570 0.55 +0.6
665,844 + PP_0570 0.55 +1.5
665,845 - PP_0570 0.55 -3.1
665,845 - PP_0570 0.55 -0.1
665,845 - PP_0570 0.55 +0.5
665,868 + PP_0570 0.56 -2.2
665,868 + PP_0570 0.56 -3.2
665,869 - PP_0570 0.56 -1.3
665,869 - PP_0570 0.56 +0.5
665,963 + PP_0570 0.58 -0.3
665,963 + PP_0570 0.58 +0.3
665,964 - PP_0570 0.58 +0.2
665,964 - PP_0570 0.58 -0.4
665,964 - PP_0570 0.58 -4.3
665,968 + PP_0570 0.58 -1.7
665,974 + PP_0570 0.58 -3.6
665,974 + PP_0570 0.58 +1.4
665,974 + PP_0570 0.58 +1.5
665,975 - PP_0570 0.58 -0.1
665,975 - PP_0570 0.58 -2.8
665,975 - PP_0570 0.58 +0.4
665,975 - PP_0570 0.58 -1.3
666,029 + PP_0570 0.59 -1.2
666,182 + PP_0570 0.62 +0.7
666,454 - PP_0570 0.68 +0.6
666,454 - PP_0570 0.68 -3.0
666,618 + PP_0570 0.71 +0.5
666,624 + PP_0570 0.71 -0.2
666,669 + PP_0570 0.72 -2.0
666,777 + PP_0570 0.74 -2.8
666,778 - PP_0570 0.74 -1.6
666,822 + PP_0570 0.75 -3.6
666,823 - PP_0570 0.75 +1.0
666,837 + PP_0570 0.76 +0.9
666,837 + PP_0570 0.76 -1.2
666,837 + PP_0570 0.76 -0.3
666,838 - PP_0570 0.76 -0.6
666,838 - PP_0570 0.76 +0.3
666,838 - PP_0570 0.76 -0.5
666,876 + PP_0570 0.76 +0.2
666,927 + PP_0570 0.77 -0.5
667,179 - PP_0570 0.82 -3.0
667,524 + PP_0570 0.90 -1.8
667,524 + PP_0570 0.90 -0.4
667,525 - PP_0570 0.90 +1.4
667,602 + +1.7
667,602 + -4.2
667,602 + +0.8
667,603 - +1.0
667,610 + -1.3
667,611 - -1.3
667,849 - -3.7
667,861 + -0.1
667,864 - +0.0
667,891 - -2.2
667,891 - +1.3
667,912 - +0.1
667,942 - +0.4
667,942 - +0.5
668,282 + PP_0571 0.28 +1.4
668,282 + PP_0571 0.28 -2.1
668,473 + PP_0571 0.85 -3.9
668,473 + PP_0571 0.85 +0.8
668,473 + PP_0571 0.85 +0.5
668,473 + PP_0571 0.85 -0.7
668,473 + PP_0571 0.85 -4.2
668,474 - PP_0571 0.85 +0.1
668,474 - PP_0571 0.85 +0.6
668,474 - PP_0571 0.85 +3.0
668,474 - PP_0571 0.85 +1.7
668,481 + PP_0571 0.87 -0.7
668,481 + PP_0571 0.87 +0.8
668,481 + PP_0571 0.87 -0.2
668,481 + PP_0571 0.87 +1.7
668,481 + PP_0571 0.87 -3.5
668,481 + PP_0571 0.87 -3.5
668,481 + PP_0571 0.87 -3.9
668,481 + PP_0571 0.87 +0.7
668,481 + PP_0571 0.87 -3.5
668,481 + PP_0571 0.87 +0.5
668,481 + +2.1
668,481 + PP_0571 0.87 -2.2
668,481 + PP_0571 0.87 -2.3
668,481 + PP_0571 0.87 -0.2
668,481 + PP_0571 0.87 -3.3
668,482 - PP_0571 0.88 +0.0
668,482 - PP_0571 0.88 -0.5
668,482 - PP_0571 0.88 -0.4
668,482 - PP_0571 0.88 +1.1
668,482 - PP_0571 0.88 +2.8
668,482 - PP_0571 0.88 +0.3
668,482 - PP_0571 0.88 +1.2
668,482 - PP_0571 0.88 +0.6
668,482 - PP_0571 0.88 -0.8
668,482 - PP_0571 0.88 -3.5
668,482 - PP_0571 0.88 +1.7
668,570 - +0.5
668,771 - -0.3
668,817 + PP_0572 0.11 -0.4
668,817 + PP_0572 0.11 +1.2
668,836 - PP_0572 0.12 -1.3
668,966 + PP_0572 0.17 +1.2
668,992 + PP_0572 0.18 -2.8
668,993 - PP_0572 0.18 -0.6
668,993 - PP_0572 0.18 -3.4
668,993 - PP_0572 0.18 +0.8

Or see this region's nucleotide sequence