Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4820 and PP_4821 overlap by 4 nucleotides PP_4821 and PP_4822 are separated by 81 nucleotides PP_4822 and PP_4823 are separated by 146 nucleotides
PP_4820: PP_4820 - tRNA-dihydrouridine synthase B, at 5,482,075 to 5,483,088
_4820
PP_4821: PP_4821 - putative Fis-like DNA-binding protein, at 5,483,085 to 5,483,405
_4821
PP_4822: PP_4822 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 5,483,487 to 5,485,094
_4822
PP_4823: PP_4823 - Phosphoribosylamine--glycine ligase, at 5,485,241 to 5,486,536
_4823
Position (kb) 5483
5484
5485
5486 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5482.630 kb on + strand, within PP_4820 at 5482.801 kb on + strand at 5482.891 kb on + strand, within PP_4820 at 5482.891 kb on + strand, within PP_4820 at 5482.891 kb on + strand, within PP_4820 at 5482.891 kb on + strand, within PP_4820 at 5482.891 kb on + strand, within PP_4820 at 5482.910 kb on + strand, within PP_4820 at 5482.910 kb on + strand, within PP_4820 at 5485.149 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 5,482,630 + PP_4820 0.55 -0.0 5,482,801 + +2.1 5,482,891 + PP_4820 0.80 -0.7 5,482,891 + PP_4820 0.80 +2.1 5,482,891 + PP_4820 0.80 +1.4 5,482,891 + PP_4820 0.80 -0.0 5,482,891 + PP_4820 0.80 -0.2 5,482,910 + PP_4820 0.82 -0.6 5,482,910 + PP_4820 0.82 +1.1 5,485,149 + -5.1
Or see this region's nucleotide sequence