Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4643 and PP_4644 are separated by 35 nucleotides PP_4644 and PP_4645 are separated by 176 nucleotides PP_4645 and PP_4646 are separated by 123 nucleotides
PP_4643: PP_4643 - Xanthine/uracil permease family protein, at 5,267,415 to 5,268,932
_4643
PP_4644: PP_4644 - DNA repair enzyme, at 5,268,968 to 5,270,338
_4644
PP_4645: PP_4645 - Large-conductance mechanosensitive channel, at 5,270,515 to 5,270,934
_4645
PP_4646: PP_4646 - ferredoxin--NADP(+) reductase, at 5,271,058 to 5,271,834
_4646
Position (kb) 5268
5269
5270
5271 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5268.082 kb on - strand, within PP_4643 at 5268.180 kb on - strand, within PP_4643 at 5268.180 kb on - strand, within PP_4643 at 5268.390 kb on + strand, within PP_4643 at 5268.390 kb on + strand, within PP_4643 at 5268.391 kb on - strand, within PP_4643 at 5268.424 kb on + strand, within PP_4643 at 5268.425 kb on - strand, within PP_4643 at 5268.425 kb on - strand, within PP_4643 at 5268.425 kb on - strand, within PP_4643 at 5268.494 kb on + strand, within PP_4643 at 5268.552 kb on + strand, within PP_4643 at 5268.553 kb on - strand, within PP_4643 at 5268.553 kb on - strand, within PP_4643 at 5268.553 kb on - strand, within PP_4643 at 5268.630 kb on + strand, within PP_4643 at 5268.630 kb on + strand, within PP_4643 at 5268.630 kb on + strand, within PP_4643 at 5268.630 kb on + strand, within PP_4643 at 5268.630 kb on + strand, within PP_4643 at 5268.631 kb on - strand, within PP_4643 at 5268.631 kb on - strand, within PP_4643 at 5268.631 kb on - strand, within PP_4643 at 5268.631 kb on - strand, within PP_4643 at 5268.790 kb on - strand at 5268.823 kb on - strand at 5269.130 kb on + strand, within PP_4644 at 5269.478 kb on - strand, within PP_4644 at 5269.508 kb on + strand, within PP_4644 at 5269.509 kb on - strand, within PP_4644 at 5269.623 kb on + strand, within PP_4644 at 5269.624 kb on - strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.969 kb on - strand, within PP_4644 at 5270.316 kb on + strand at 5270.316 kb on + strand at 5270.316 kb on + strand at 5270.317 kb on - strand at 5270.317 kb on - strand at 5270.317 kb on - strand at 5270.317 kb on - strand at 5270.317 kb on - strand at 5270.370 kb on + strand at 5270.370 kb on + strand at 5270.370 kb on + strand at 5270.371 kb on - strand at 5270.371 kb on - strand at 5270.424 kb on + strand at 5270.465 kb on + strand at 5270.466 kb on - strand at 5270.466 kb on - strand at 5270.474 kb on + strand at 5270.475 kb on - strand at 5270.475 kb on - strand at 5270.475 kb on - strand at 5270.475 kb on - strand at 5270.475 kb on - strand at 5270.485 kb on - strand at 5270.485 kb on - strand at 5270.501 kb on - strand at 5270.580 kb on + strand, within PP_4645 at 5270.717 kb on + strand, within PP_4645 at 5270.717 kb on + strand, within PP_4645 at 5270.718 kb on - strand, within PP_4645 at 5270.718 kb on - strand, within PP_4645 at 5270.737 kb on + strand, within PP_4645 at 5270.760 kb on - strand, within PP_4645 at 5270.760 kb on - strand, within PP_4645 at 5271.031 kb on - strand at 5271.059 kb on + strand at 5271.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 5,268,082 - PP_4643 0.44 +1.3 5,268,180 - PP_4643 0.50 +1.4 5,268,180 - PP_4643 0.50 +0.7 5,268,390 + PP_4643 0.64 -0.9 5,268,390 + PP_4643 0.64 -3.2 5,268,391 - PP_4643 0.64 -1.4 5,268,424 + PP_4643 0.66 -3.7 5,268,425 - PP_4643 0.67 +0.3 5,268,425 - PP_4643 0.67 -0.3 5,268,425 - PP_4643 0.67 +1.7 5,268,494 + PP_4643 0.71 +2.0 5,268,552 + PP_4643 0.75 +0.6 5,268,553 - PP_4643 0.75 +0.9 5,268,553 - PP_4643 0.75 -2.7 5,268,553 - PP_4643 0.75 +0.4 5,268,630 + PP_4643 0.80 +0.1 5,268,630 + PP_4643 0.80 -0.4 5,268,630 + PP_4643 0.80 +0.2 5,268,630 + PP_4643 0.80 -0.7 5,268,630 + PP_4643 0.80 +1.4 5,268,631 - PP_4643 0.80 +1.9 5,268,631 - PP_4643 0.80 -0.4 5,268,631 - PP_4643 0.80 -0.1 5,268,631 - PP_4643 0.80 -0.5 5,268,790 - +0.1 5,268,823 - +0.1 5,269,130 + PP_4644 0.12 +0.3 5,269,478 - PP_4644 0.37 +0.9 5,269,508 + PP_4644 0.39 +1.3 5,269,509 - PP_4644 0.39 +0.2 5,269,623 + PP_4644 0.48 -3.2 5,269,624 - PP_4644 0.48 -0.1 5,269,728 + PP_4644 0.55 -3.1 5,269,728 + PP_4644 0.55 +0.2 5,269,728 + PP_4644 0.55 +0.5 5,269,728 + PP_4644 0.55 -0.0 5,269,968 + PP_4644 0.73 -2.5 5,269,968 + PP_4644 0.73 -3.5 5,269,968 + PP_4644 0.73 -0.8 5,269,968 + PP_4644 0.73 +0.4 5,269,968 + PP_4644 0.73 -2.4 5,269,968 + PP_4644 0.73 -0.3 5,269,969 - PP_4644 0.73 +0.6 5,270,316 + -0.3 5,270,316 + +1.0 5,270,316 + -0.9 5,270,317 - -0.5 5,270,317 - +0.1 5,270,317 - +0.3 5,270,317 - +1.3 5,270,317 - +0.1 5,270,370 + -0.7 5,270,370 + -1.1 5,270,370 + -0.9 5,270,371 - +0.9 5,270,371 - -0.1 5,270,424 + -0.5 5,270,465 + +1.3 5,270,466 - -0.0 5,270,466 - -0.7 5,270,474 + -0.1 5,270,475 - -0.5 5,270,475 - -0.0 5,270,475 - +1.0 5,270,475 - -0.4 5,270,475 - -0.9 5,270,485 - -0.2 5,270,485 - +0.5 5,270,501 - +0.3 5,270,580 + PP_4645 0.15 +0.3 5,270,717 + PP_4645 0.48 -0.5 5,270,717 + PP_4645 0.48 -0.7 5,270,718 - PP_4645 0.48 -2.2 5,270,718 - PP_4645 0.48 +0.4 5,270,737 + PP_4645 0.53 +0.6 5,270,760 - PP_4645 0.58 -1.3 5,270,760 - PP_4645 0.58 +0.2 5,271,031 - -1.7 5,271,059 + -0.5 5,271,060 - +1.2
Or see this region's nucleotide sequence