Experiment: Growth at pH9 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4206 and PP_4207 are separated by 72 nucleotides PP_4207 and PP_4208 are separated by 168 nucleotides PP_4208 and PP_4209 are separated by 212 nucleotides
PP_4206: PP_4206 - Major facilitator family transporter, at 4,750,846 to 4,752,171
_4206
PP_4207: PP_4207 - conserved protein of unknown function, at 4,752,244 to 4,752,723
_4207
PP_4208: PP_4208 - RNA polymerase sigma-70 factor, ECF subfamily, at 4,752,892 to 4,753,368
_4208
PP_4209: PP_4209 - ABC export system, membrane fusion protein, at 4,753,581 to 4,754,759
_4209
Position (kb) 4752
4753 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4751.664 kb on - strand, within PP_4206 at 4751.834 kb on + strand, within PP_4206 at 4751.835 kb on - strand, within PP_4206 at 4752.206 kb on + strand at 4752.213 kb on + strand at 4752.213 kb on + strand at 4752.214 kb on - strand at 4752.214 kb on - strand at 4752.256 kb on + strand at 4752.262 kb on - strand at 4752.262 kb on - strand at 4752.297 kb on + strand, within PP_4207 at 4752.297 kb on + strand, within PP_4207 at 4752.325 kb on + strand, within PP_4207 at 4752.468 kb on - strand, within PP_4207 at 4752.546 kb on + strand, within PP_4207 at 4752.636 kb on - strand, within PP_4207 at 4752.746 kb on - strand at 4752.768 kb on - strand at 4752.768 kb on - strand at 4752.768 kb on - strand at 4752.786 kb on - strand at 4752.822 kb on + strand at 4752.823 kb on - strand at 4752.865 kb on - strand at 4753.122 kb on + strand, within PP_4208 at 4753.122 kb on + strand, within PP_4208 at 4753.123 kb on - strand, within PP_4208 at 4753.123 kb on - strand, within PP_4208 at 4753.123 kb on - strand, within PP_4208 at 4753.123 kb on - strand, within PP_4208 at 4753.123 kb on - strand, within PP_4208 at 4753.220 kb on + strand, within PP_4208 at 4753.280 kb on + strand, within PP_4208 at 4753.280 kb on + strand, within PP_4208 at 4753.280 kb on + strand, within PP_4208 at 4753.280 kb on + strand, within PP_4208 at 4753.281 kb on - strand, within PP_4208 at 4753.281 kb on - strand, within PP_4208 at 4753.317 kb on + strand, within PP_4208 at 4753.355 kb on + strand at 4753.355 kb on + strand at 4753.356 kb on - strand at 4753.356 kb on - strand at 4753.356 kb on - strand at 4753.358 kb on + strand at 4753.358 kb on + strand at 4753.358 kb on + strand at 4753.359 kb on - strand at 4753.359 kb on - strand at 4753.359 kb on - strand at 4753.359 kb on - strand at 4753.375 kb on - strand at 4753.425 kb on + strand at 4753.426 kb on - strand at 4753.481 kb on + strand at 4753.481 kb on + strand at 4753.482 kb on - strand at 4753.515 kb on + strand at 4753.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate remove 4,751,664 - PP_4206 0.62 -0.1 4,751,834 + PP_4206 0.75 -0.8 4,751,835 - PP_4206 0.75 -0.0 4,752,206 + +1.0 4,752,213 + +0.2 4,752,213 + -2.9 4,752,214 - -3.1 4,752,214 - +1.4 4,752,256 + +0.3 4,752,262 - +0.2 4,752,262 - -0.9 4,752,297 + PP_4207 0.11 +1.1 4,752,297 + PP_4207 0.11 -3.4 4,752,325 + PP_4207 0.17 +2.1 4,752,468 - PP_4207 0.47 -3.0 4,752,546 + PP_4207 0.63 +0.9 4,752,636 - PP_4207 0.82 -1.7 4,752,746 - +1.3 4,752,768 - +0.2 4,752,768 - +1.3 4,752,768 - +0.7 4,752,786 - +0.2 4,752,822 + +0.1 4,752,823 - +1.2 4,752,865 - -3.5 4,753,122 + PP_4208 0.48 +1.3 4,753,122 + PP_4208 0.48 +1.0 4,753,123 - PP_4208 0.48 -0.9 4,753,123 - PP_4208 0.48 +1.0 4,753,123 - PP_4208 0.48 -0.3 4,753,123 - PP_4208 0.48 -3.5 4,753,123 - PP_4208 0.48 +0.5 4,753,220 + PP_4208 0.69 +1.0 4,753,280 + PP_4208 0.81 -0.4 4,753,280 + PP_4208 0.81 -0.2 4,753,280 + PP_4208 0.81 +0.7 4,753,280 + PP_4208 0.81 -0.7 4,753,281 - PP_4208 0.82 +0.6 4,753,281 - PP_4208 0.82 +1.0 4,753,317 + PP_4208 0.89 +0.8 4,753,355 + -0.1 4,753,355 + -4.2 4,753,356 - -1.0 4,753,356 - -0.9 4,753,356 - +1.0 4,753,358 + +0.2 4,753,358 + -0.8 4,753,358 + -0.4 4,753,359 - -0.2 4,753,359 - -0.5 4,753,359 - +1.4 4,753,359 - +2.4 4,753,375 - -0.5 4,753,425 + +3.1 4,753,426 - -3.0 4,753,481 + -1.1 4,753,481 + +0.7 4,753,482 - +0.4 4,753,515 + +1.4 4,753,516 - +0.6
Or see this region's nucleotide sequence