Strain Fitness in Pseudomonas putida KT2440 around PP_2864

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2862 and PP_2863 are separated by 28 nucleotidesPP_2863 and PP_2864 are separated by 58 nucleotidesPP_2864 and PP_2865 overlap by 20 nucleotides PP_2862: PP_2862 - Undecaprenyl-diphosphatase, at 3,264,844 to 3,265,677 _2862 PP_2863: PP_2863 - conserved membrane protein of unknown function, at 3,265,706 to 3,266,083 _2863 PP_2864: PP_2864 - conserved protein of unknown function, at 3,266,142 to 3,266,513 _2864 PP_2865: PP_2865 - Transcriptional regulator, LysR family, at 3,266,494 to 3,267,396 _2865 Position (kb) 3266 3267Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3265.158 kb on + strand, within PP_2862at 3265.158 kb on + strand, within PP_2862at 3265.168 kb on + strand, within PP_2862at 3265.169 kb on - strand, within PP_2862at 3265.450 kb on + strand, within PP_2862at 3265.450 kb on + strand, within PP_2862at 3265.451 kb on - strand, within PP_2862at 3265.451 kb on - strand, within PP_2862at 3265.459 kb on + strand, within PP_2862at 3265.465 kb on + strand, within PP_2862at 3265.547 kb on + strand, within PP_2862at 3265.579 kb on - strand, within PP_2862at 3265.579 kb on - strand, within PP_2862at 3265.579 kb on - strandat 3265.579 kb on - strand, within PP_2862at 3265.582 kb on + strand, within PP_2862at 3265.583 kb on - strand, within PP_2862at 3265.850 kb on + strand, within PP_2863at 3265.851 kb on - strand, within PP_2863at 3265.876 kb on + strand, within PP_2863at 3265.876 kb on + strand, within PP_2863at 3265.877 kb on - strand, within PP_2863at 3265.891 kb on + strand, within PP_2863at 3265.892 kb on - strand, within PP_2863at 3265.892 kb on - strand, within PP_2863at 3266.067 kb on - strandat 3266.067 kb on - strandat 3266.095 kb on - strandat 3266.187 kb on + strand, within PP_2864at 3266.188 kb on - strand, within PP_2864at 3266.281 kb on + strand, within PP_2864at 3266.428 kb on + strand, within PP_2864at 3266.501 kb on + strandat 3266.501 kb on + strandat 3266.501 kb on + strandat 3266.501 kb on + strandat 3266.502 kb on - strandat 3266.502 kb on - strandat 3266.502 kb on - strandat 3266.601 kb on - strand, within PP_2865at 3266.707 kb on + strand, within PP_2865at 3266.719 kb on - strand, within PP_2865at 3266.722 kb on + strand, within PP_2865at 3266.722 kb on + strand, within PP_2865at 3266.722 kb on + strand, within PP_2865at 3266.723 kb on - strand, within PP_2865at 3266.803 kb on + strand, within PP_2865at 3266.803 kb on + strand, within PP_2865at 3266.963 kb on - strand, within PP_2865at 3267.019 kb on + strand, within PP_2865at 3267.019 kb on + strand, within PP_2865at 3267.020 kb on - strand, within PP_2865at 3267.020 kb on - strand, within PP_2865at 3267.020 kb on - strand, within PP_2865at 3267.020 kb on - strand, within PP_2865at 3267.020 kb on - strand, within PP_2865at 3267.115 kb on + strand, within PP_2865at 3267.115 kb on + strand, within PP_2865at 3267.203 kb on + strand, within PP_2865at 3267.203 kb on + strand, within PP_2865at 3267.203 kb on + strand, within PP_2865at 3267.204 kb on - strand, within PP_2865at 3267.204 kb on - strand, within PP_2865at 3267.204 kb on - strand, within PP_2865at 3267.204 kb on - strand, within PP_2865at 3267.385 kb on - strandat 3267.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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3,265,158 + PP_2862 0.38 +0.2
3,265,158 + PP_2862 0.38 -1.2
3,265,168 + PP_2862 0.39 -0.3
3,265,169 - PP_2862 0.39 +0.4
3,265,450 + PP_2862 0.73 -0.5
3,265,450 + PP_2862 0.73 +0.6
3,265,451 - PP_2862 0.73 +0.8
3,265,451 - PP_2862 0.73 -0.3
3,265,459 + PP_2862 0.74 -0.3
3,265,465 + PP_2862 0.74 -0.5
3,265,547 + PP_2862 0.84 -1.2
3,265,579 - PP_2862 0.88 +0.5
3,265,579 - PP_2862 0.88 -0.1
3,265,579 - -0.8
3,265,579 - PP_2862 0.88 +0.3
3,265,582 + PP_2862 0.88 +0.8
3,265,583 - PP_2862 0.89 +1.5
3,265,850 + PP_2863 0.38 -0.2
3,265,851 - PP_2863 0.38 +0.4
3,265,876 + PP_2863 0.45 +2.5
3,265,876 + PP_2863 0.45 -1.0
3,265,877 - PP_2863 0.45 -4.3
3,265,891 + PP_2863 0.49 -0.8
3,265,892 - PP_2863 0.49 -2.2
3,265,892 - PP_2863 0.49 -0.3
3,266,067 - +0.2
3,266,067 - +0.8
3,266,095 - +0.6
3,266,187 + PP_2864 0.12 +0.7
3,266,188 - PP_2864 0.12 +1.9
3,266,281 + PP_2864 0.37 +1.2
3,266,428 + PP_2864 0.77 +0.4
3,266,501 + +0.9
3,266,501 + +0.4
3,266,501 + -0.4
3,266,501 + -3.3
3,266,502 - -0.3
3,266,502 - -0.3
3,266,502 - +1.3
3,266,601 - PP_2865 0.12 +0.9
3,266,707 + PP_2865 0.24 -1.7
3,266,719 - PP_2865 0.25 +0.8
3,266,722 + PP_2865 0.25 +0.6
3,266,722 + PP_2865 0.25 -3.8
3,266,722 + PP_2865 0.25 +0.5
3,266,723 - PP_2865 0.25 -0.0
3,266,803 + PP_2865 0.34 +1.1
3,266,803 + PP_2865 0.34 +0.7
3,266,963 - PP_2865 0.52 -2.3
3,267,019 + PP_2865 0.58 -3.3
3,267,019 + PP_2865 0.58 -0.5
3,267,020 - PP_2865 0.58 +1.0
3,267,020 - PP_2865 0.58 +0.1
3,267,020 - PP_2865 0.58 +1.3
3,267,020 - PP_2865 0.58 -1.1
3,267,020 - PP_2865 0.58 +0.2
3,267,115 + PP_2865 0.69 +0.6
3,267,115 + PP_2865 0.69 -1.1
3,267,203 + PP_2865 0.79 +0.5
3,267,203 + PP_2865 0.79 -2.1
3,267,203 + PP_2865 0.79 +0.6
3,267,204 - PP_2865 0.79 +0.9
3,267,204 - PP_2865 0.79 -0.7
3,267,204 - PP_2865 0.79 +0.1
3,267,204 - PP_2865 0.79 -0.4
3,267,385 - -0.8
3,267,385 - +0.1

Or see this region's nucleotide sequence