Strain Fitness in Pseudomonas putida KT2440 around PP_0882

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0881 and PP_0882 are separated by 91 nucleotidesPP_0882 and PP_0883 are separated by 54 nucleotides PP_0881: PP_0881 - dipeptide ABC transporter - putative membrane subunit, at 1,020,976 to 1,021,986 _0881 PP_0882: PP_0882 - dipeptide ABC transporter - periplasmic binding protein, at 1,022,078 to 1,023,712 _0882 PP_0883: PP_0883 - glycine-glutamate dipeptide porin, at 1,023,767 to 1,025,146 _0883 Position (kb) 1022 1023 1024Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1021.289 kb on + strand, within PP_0881at 1021.290 kb on - strand, within PP_0881at 1021.304 kb on - strand, within PP_0881at 1021.437 kb on + strand, within PP_0881at 1021.469 kb on + strandat 1021.579 kb on + strand, within PP_0881at 1021.579 kb on + strand, within PP_0881at 1021.580 kb on - strand, within PP_0881at 1021.580 kb on - strand, within PP_0881at 1021.580 kb on - strand, within PP_0881at 1021.631 kb on - strand, within PP_0881at 1021.631 kb on - strand, within PP_0881at 1021.781 kb on + strand, within PP_0881at 1021.781 kb on + strand, within PP_0881at 1021.782 kb on - strand, within PP_0881at 1021.782 kb on - strand, within PP_0881at 1021.907 kb on - strandat 1021.948 kb on + strandat 1021.948 kb on + strandat 1021.997 kb on - strandat 1022.079 kb on + strandat 1022.079 kb on + strandat 1022.080 kb on - strandat 1022.080 kb on - strandat 1022.130 kb on + strandat 1022.130 kb on + strandat 1022.131 kb on - strandat 1022.226 kb on + strandat 1022.226 kb on + strandat 1022.310 kb on + strand, within PP_0882at 1022.310 kb on + strand, within PP_0882at 1022.310 kb on + strand, within PP_0882at 1022.311 kb on - strand, within PP_0882at 1022.567 kb on + strand, within PP_0882at 1022.614 kb on + strand, within PP_0882at 1022.758 kb on + strand, within PP_0882at 1022.781 kb on + strand, within PP_0882at 1022.781 kb on + strand, within PP_0882at 1022.782 kb on - strand, within PP_0882at 1022.782 kb on - strand, within PP_0882at 1022.795 kb on - strand, within PP_0882at 1023.037 kb on - strand, within PP_0882at 1023.037 kb on - strand, within PP_0882at 1023.264 kb on + strand, within PP_0882at 1023.265 kb on - strand, within PP_0882at 1023.265 kb on - strand, within PP_0882at 1023.265 kb on - strand, within PP_0882at 1023.372 kb on + strand, within PP_0882at 1023.373 kb on - strand, within PP_0882at 1023.418 kb on - strand, within PP_0882at 1023.418 kb on - strand, within PP_0882at 1023.418 kb on - strand, within PP_0882at 1023.549 kb on + strandat 1023.549 kb on + strandat 1023.550 kb on - strandat 1023.550 kb on - strandat 1023.587 kb on - strandat 1023.725 kb on - strandat 1023.725 kb on - strandat 1023.855 kb on + strandat 1023.856 kb on - strandat 1023.856 kb on - strandat 1023.903 kb on + strandat 1023.904 kb on - strandat 1023.927 kb on + strand, within PP_0883at 1023.927 kb on + strand, within PP_0883at 1023.927 kb on + strand, within PP_0883at 1023.928 kb on - strand, within PP_0883at 1023.928 kb on - strand, within PP_0883at 1023.928 kb on - strand, within PP_0883at 1023.928 kb on - strand, within PP_0883at 1024.011 kb on + strand, within PP_0883at 1024.012 kb on - strand, within PP_0883at 1024.012 kb on - strand, within PP_0883at 1024.062 kb on + strand, within PP_0883at 1024.062 kb on + strand, within PP_0883at 1024.062 kb on + strand, within PP_0883at 1024.063 kb on - strand, within PP_0883at 1024.063 kb on - strand, within PP_0883at 1024.158 kb on + strand, within PP_0883at 1024.233 kb on + strand, within PP_0883at 1024.287 kb on + strand, within PP_0883at 1024.287 kb on + strandat 1024.287 kb on + strand, within PP_0883at 1024.290 kb on + strand, within PP_0883at 1024.290 kb on + strand, within PP_0883at 1024.290 kb on + strand, within PP_0883at 1024.290 kb on + strand, within PP_0883at 1024.353 kb on + strand, within PP_0883at 1024.354 kb on - strand, within PP_0883at 1024.354 kb on - strand, within PP_0883at 1024.354 kb on - strand, within PP_0883at 1024.354 kb on - strand, within PP_0883at 1024.356 kb on + strand, within PP_0883at 1024.357 kb on - strand, within PP_0883at 1024.357 kb on - strand, within PP_0883at 1024.389 kb on + strand, within PP_0883at 1024.400 kb on - strand, within PP_0883at 1024.400 kb on - strand, within PP_0883at 1024.400 kb on - strand, within PP_0883at 1024.422 kb on + strand, within PP_0883at 1024.423 kb on - strand, within PP_0883at 1024.508 kb on - strand, within PP_0883at 1024.618 kb on - strand, within PP_0883at 1024.618 kb on - strand, within PP_0883at 1024.657 kb on + strand, within PP_0883at 1024.687 kb on + strand, within PP_0883at 1024.688 kb on - strand, within PP_0883

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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1,021,289 + PP_0881 0.31 +0.8
1,021,290 - PP_0881 0.31 +0.8
1,021,304 - PP_0881 0.32 +1.4
1,021,437 + PP_0881 0.46 +0.5
1,021,469 + -0.4
1,021,579 + PP_0881 0.60 +0.7
1,021,579 + PP_0881 0.60 -4.3
1,021,580 - PP_0881 0.60 -3.2
1,021,580 - PP_0881 0.60 -2.4
1,021,580 - PP_0881 0.60 +1.8
1,021,631 - PP_0881 0.65 -2.4
1,021,631 - PP_0881 0.65 +0.9
1,021,781 + PP_0881 0.80 -3.1
1,021,781 + PP_0881 0.80 +1.0
1,021,782 - PP_0881 0.80 +0.9
1,021,782 - PP_0881 0.80 +0.4
1,021,907 - -2.8
1,021,948 + +2.3
1,021,948 + +1.7
1,021,997 - +0.3
1,022,079 + -0.6
1,022,079 + +0.3
1,022,080 - -2.1
1,022,080 - -0.4
1,022,130 + -4.0
1,022,130 + -3.3
1,022,131 - +0.8
1,022,226 + -1.5
1,022,226 + +0.2
1,022,310 + PP_0882 0.14 +1.3
1,022,310 + PP_0882 0.14 +2.4
1,022,310 + PP_0882 0.14 +0.4
1,022,311 - PP_0882 0.14 +0.2
1,022,567 + PP_0882 0.30 -0.7
1,022,614 + PP_0882 0.33 +2.1
1,022,758 + PP_0882 0.42 +1.7
1,022,781 + PP_0882 0.43 -3.9
1,022,781 + PP_0882 0.43 +1.1
1,022,782 - PP_0882 0.43 -1.3
1,022,782 - PP_0882 0.43 -0.8
1,022,795 - PP_0882 0.44 +1.6
1,023,037 - PP_0882 0.59 +1.1
1,023,037 - PP_0882 0.59 +0.0
1,023,264 + PP_0882 0.73 +1.6
1,023,265 - PP_0882 0.73 -3.5
1,023,265 - PP_0882 0.73 +0.6
1,023,265 - PP_0882 0.73 +0.9
1,023,372 + PP_0882 0.79 +1.1
1,023,373 - PP_0882 0.79 +1.6
1,023,418 - PP_0882 0.82 -0.2
1,023,418 - PP_0882 0.82 +1.3
1,023,418 - PP_0882 0.82 +0.4
1,023,549 + -1.1
1,023,549 + +0.3
1,023,550 - +1.3
1,023,550 - -1.2
1,023,587 - +1.6
1,023,725 - -1.6
1,023,725 - +0.1
1,023,855 + +0.8
1,023,856 - +1.2
1,023,856 - +1.6
1,023,903 + -2.7
1,023,904 - -0.5
1,023,927 + PP_0883 0.12 +0.6
1,023,927 + PP_0883 0.12 +0.4
1,023,927 + PP_0883 0.12 +1.0
1,023,928 - PP_0883 0.12 +0.7
1,023,928 - PP_0883 0.12 +0.1
1,023,928 - PP_0883 0.12 +0.2
1,023,928 - PP_0883 0.12 +0.1
1,024,011 + PP_0883 0.18 +0.5
1,024,012 - PP_0883 0.18 -3.5
1,024,012 - PP_0883 0.18 +0.1
1,024,062 + PP_0883 0.21 -0.0
1,024,062 + PP_0883 0.21 +0.9
1,024,062 + PP_0883 0.21 -0.5
1,024,063 - PP_0883 0.21 +1.2
1,024,063 - PP_0883 0.21 -0.1
1,024,158 + PP_0883 0.28 +0.5
1,024,233 + PP_0883 0.34 -1.1
1,024,287 + PP_0883 0.38 +0.5
1,024,287 + -0.4
1,024,287 + PP_0883 0.38 +0.6
1,024,290 + PP_0883 0.38 +0.5
1,024,290 + PP_0883 0.38 -0.4
1,024,290 + PP_0883 0.38 +1.0
1,024,290 + PP_0883 0.38 +0.3
1,024,353 + PP_0883 0.42 +1.0
1,024,354 - PP_0883 0.43 -3.2
1,024,354 - PP_0883 0.43 -2.3
1,024,354 - PP_0883 0.43 -1.0
1,024,354 - PP_0883 0.43 +1.3
1,024,356 + PP_0883 0.43 +0.6
1,024,357 - PP_0883 0.43 +1.7
1,024,357 - PP_0883 0.43 -0.4
1,024,389 + PP_0883 0.45 +0.1
1,024,400 - PP_0883 0.46 -0.2
1,024,400 - PP_0883 0.46 -0.4
1,024,400 - PP_0883 0.46 -0.2
1,024,422 + PP_0883 0.47 +1.3
1,024,423 - PP_0883 0.48 +0.4
1,024,508 - PP_0883 0.54 -0.6
1,024,618 - PP_0883 0.62 +0.5
1,024,618 - PP_0883 0.62 +1.3
1,024,657 + PP_0883 0.64 +0.4
1,024,687 + PP_0883 0.67 -1.2
1,024,688 - PP_0883 0.67 -4.0

Or see this region's nucleotide sequence