Strain Fitness in Pseudomonas putida KT2440 around PP_3200

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3199 and PP_3200 are separated by 44 nucleotidesPP_3200 and PP_5590 are separated by 14 nucleotides PP_3199: PP_3199 - putative Monooxygenase, at 3,628,211 to 3,629,335 _3199 PP_3200: PP_3200 - conserved exported protein of unknown function, at 3,629,380 to 3,631,092 _3200 PP_5590: PP_5590 - conserved exported protein of unknown function, at 3,631,107 to 3,632,474 _5590 Position (kb) 3629 3630 3631 3632Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3628.403 kb on + strand, within PP_3199at 3628.442 kb on + strand, within PP_3199at 3628.442 kb on + strand, within PP_3199at 3628.443 kb on - strand, within PP_3199at 3628.443 kb on - strand, within PP_3199at 3628.443 kb on - strand, within PP_3199at 3628.665 kb on - strand, within PP_3199at 3628.808 kb on + strand, within PP_3199at 3628.809 kb on - strand, within PP_3199at 3628.809 kb on - strand, within PP_3199at 3628.862 kb on + strand, within PP_3199at 3628.862 kb on + strand, within PP_3199at 3629.566 kb on - strand, within PP_3200at 3629.592 kb on + strand, within PP_3200at 3629.715 kb on + strand, within PP_3200at 3629.715 kb on + strand, within PP_3200at 3629.715 kb on + strand, within PP_3200at 3629.716 kb on - strand, within PP_3200at 3629.716 kb on - strand, within PP_3200at 3629.719 kb on + strandat 3629.719 kb on + strand, within PP_3200at 3629.719 kb on + strand, within PP_3200at 3629.719 kb on + strand, within PP_3200at 3629.720 kb on - strand, within PP_3200at 3629.720 kb on - strand, within PP_3200at 3629.720 kb on - strand, within PP_3200at 3629.770 kb on + strand, within PP_3200at 3629.770 kb on + strand, within PP_3200at 3629.816 kb on - strand, within PP_3200at 3629.816 kb on - strand, within PP_3200at 3629.892 kb on + strand, within PP_3200at 3629.893 kb on - strand, within PP_3200at 3629.893 kb on - strand, within PP_3200at 3629.948 kb on - strand, within PP_3200at 3630.128 kb on - strand, within PP_3200at 3630.128 kb on - strand, within PP_3200at 3630.130 kb on + strand, within PP_3200at 3630.131 kb on - strandat 3630.131 kb on - strand, within PP_3200at 3630.131 kb on - strand, within PP_3200at 3630.171 kb on + strand, within PP_3200at 3630.175 kb on + strand, within PP_3200at 3630.175 kb on + strand, within PP_3200at 3630.175 kb on + strand, within PP_3200at 3630.352 kb on + strand, within PP_3200at 3630.352 kb on + strand, within PP_3200at 3630.353 kb on - strand, within PP_3200at 3630.393 kb on - strand, within PP_3200at 3630.393 kb on - strand, within PP_3200at 3630.393 kb on - strand, within PP_3200at 3630.446 kb on - strand, within PP_3200at 3630.455 kb on - strand, within PP_3200at 3630.863 kb on - strand, within PP_3200at 3630.863 kb on - strand, within PP_3200at 3630.863 kb on - strand, within PP_3200at 3630.863 kb on - strand, within PP_3200at 3630.985 kb on + strandat 3630.986 kb on - strandat 3631.118 kb on + strandat 3631.122 kb on - strandat 3631.291 kb on - strand, within PP_5590at 3631.291 kb on - strand, within PP_5590at 3631.291 kb on - strand, within PP_5590at 3631.311 kb on + strand, within PP_5590at 3631.449 kb on + strand, within PP_5590at 3631.449 kb on + strand, within PP_5590at 3631.449 kb on + strand, within PP_5590at 3631.450 kb on - strand, within PP_5590at 3631.504 kb on - strand, within PP_5590at 3631.884 kb on + strand, within PP_5590at 3631.884 kb on + strand, within PP_5590at 3631.885 kb on - strandat 3631.885 kb on - strand, within PP_5590at 3631.980 kb on + strand, within PP_5590at 3632.040 kb on + strand, within PP_5590at 3632.040 kb on + strand, within PP_5590at 3632.040 kb on + strand, within PP_5590at 3632.040 kb on + strand, within PP_5590at 3632.041 kb on - strand, within PP_5590at 3632.041 kb on - strand, within PP_5590at 3632.041 kb on - strand, within PP_5590at 3632.049 kb on + strand, within PP_5590at 3632.049 kb on + strand, within PP_5590

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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3,628,403 + PP_3199 0.17 +0.1
3,628,442 + PP_3199 0.21 +1.0
3,628,442 + PP_3199 0.21 +0.1
3,628,443 - PP_3199 0.21 +1.5
3,628,443 - PP_3199 0.21 -3.3
3,628,443 - PP_3199 0.21 -1.0
3,628,665 - PP_3199 0.40 +0.7
3,628,808 + PP_3199 0.53 -0.6
3,628,809 - PP_3199 0.53 +1.9
3,628,809 - PP_3199 0.53 +0.5
3,628,862 + PP_3199 0.58 -0.2
3,628,862 + PP_3199 0.58 -3.7
3,629,566 - PP_3200 0.11 -2.1
3,629,592 + PP_3200 0.12 -1.9
3,629,715 + PP_3200 0.20 -3.3
3,629,715 + PP_3200 0.20 -2.9
3,629,715 + PP_3200 0.20 +1.7
3,629,716 - PP_3200 0.20 +0.5
3,629,716 - PP_3200 0.20 +0.2
3,629,719 + +0.1
3,629,719 + PP_3200 0.20 -0.3
3,629,719 + PP_3200 0.20 +1.4
3,629,719 + PP_3200 0.20 -0.4
3,629,720 - PP_3200 0.20 +0.9
3,629,720 - PP_3200 0.20 +0.8
3,629,720 - PP_3200 0.20 -0.9
3,629,770 + PP_3200 0.23 -3.8
3,629,770 + PP_3200 0.23 -3.5
3,629,816 - PP_3200 0.25 +0.9
3,629,816 - PP_3200 0.25 -0.9
3,629,892 + PP_3200 0.30 -4.1
3,629,893 - PP_3200 0.30 +1.8
3,629,893 - PP_3200 0.30 -1.2
3,629,948 - PP_3200 0.33 -3.2
3,630,128 - PP_3200 0.44 -0.1
3,630,128 - PP_3200 0.44 +0.0
3,630,130 + PP_3200 0.44 -1.4
3,630,131 - +0.7
3,630,131 - PP_3200 0.44 -2.6
3,630,131 - PP_3200 0.44 -0.3
3,630,171 + PP_3200 0.46 -0.5
3,630,175 + PP_3200 0.46 -2.6
3,630,175 + PP_3200 0.46 +0.5
3,630,175 + PP_3200 0.46 +1.0
3,630,352 + PP_3200 0.57 -0.0
3,630,352 + PP_3200 0.57 +2.1
3,630,353 - PP_3200 0.57 -0.4
3,630,393 - PP_3200 0.59 +0.3
3,630,393 - PP_3200 0.59 +1.6
3,630,393 - PP_3200 0.59 +0.7
3,630,446 - PP_3200 0.62 -1.1
3,630,455 - PP_3200 0.63 -3.0
3,630,863 - PP_3200 0.87 -1.1
3,630,863 - PP_3200 0.87 -0.9
3,630,863 - PP_3200 0.87 -3.0
3,630,863 - PP_3200 0.87 +0.4
3,630,985 + -0.9
3,630,986 - +0.4
3,631,118 + -0.2
3,631,122 - +0.9
3,631,291 - PP_5590 0.13 -0.9
3,631,291 - PP_5590 0.13 -4.3
3,631,291 - PP_5590 0.13 -1.3
3,631,311 + PP_5590 0.15 +0.5
3,631,449 + PP_5590 0.25 -3.6
3,631,449 + PP_5590 0.25 +1.2
3,631,449 + PP_5590 0.25 -3.7
3,631,450 - PP_5590 0.25 -0.5
3,631,504 - PP_5590 0.29 +0.0
3,631,884 + PP_5590 0.57 +1.0
3,631,884 + PP_5590 0.57 +0.4
3,631,885 - +1.0
3,631,885 - PP_5590 0.57 -0.6
3,631,980 + PP_5590 0.64 +0.7
3,632,040 + PP_5590 0.68 +1.1
3,632,040 + PP_5590 0.68 -0.7
3,632,040 + PP_5590 0.68 +0.5
3,632,040 + PP_5590 0.68 -1.4
3,632,041 - PP_5590 0.68 +0.8
3,632,041 - PP_5590 0.68 -2.3
3,632,041 - PP_5590 0.68 -1.7
3,632,049 + PP_5590 0.69 +0.6
3,632,049 + PP_5590 0.69 +0.5

Or see this region's nucleotide sequence