Strain Fitness in Pseudomonas putida KT2440 around PP_1265

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1264 and PP_1265 overlap by 11 nucleotidesPP_1265 and PP_1266 are separated by 10 nucleotidesPP_1266 and PP_1267 are separated by 72 nucleotides PP_1264: PP_1264 - putative Fusaric acid resistance protein, at 1,445,903 to 1,448,080 _1264 PP_1265: PP_1265 - conserved protein of unknown function, at 1,448,070 to 1,448,270 _1265 PP_1266: PP_1266 - putative Fusaric acid resistance protein, at 1,448,281 to 1,449,141 _1266 PP_1267: PP_1267 - toxin endoribonuclease of toxin antitoxin system SohB(PrlF)-YhaV, at 1,449,214 to 1,449,681 _1267 Position (kb) 1448 1449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1447.136 kb on + strand, within PP_1264at 1447.137 kb on - strand, within PP_1264at 1447.197 kb on + strand, within PP_1264at 1447.197 kb on + strand, within PP_1264at 1447.197 kb on + strand, within PP_1264at 1447.198 kb on - strand, within PP_1264at 1447.198 kb on - strand, within PP_1264at 1447.198 kb on - strand, within PP_1264at 1447.389 kb on - strand, within PP_1264at 1447.466 kb on + strand, within PP_1264at 1447.467 kb on - strand, within PP_1264at 1447.484 kb on + strand, within PP_1264at 1447.484 kb on + strand, within PP_1264at 1447.485 kb on - strand, within PP_1264at 1447.676 kb on + strand, within PP_1264at 1447.677 kb on - strand, within PP_1264at 1448.001 kb on - strandat 1448.017 kb on + strandat 1448.017 kb on + strandat 1448.018 kb on - strandat 1448.018 kb on - strandat 1448.018 kb on - strandat 1448.100 kb on + strand, within PP_1265at 1448.100 kb on + strand, within PP_1265at 1448.100 kb on + strand, within PP_1265at 1448.100 kb on + strand, within PP_1265at 1448.100 kb on + strand, within PP_1265at 1448.100 kb on + strand, within PP_1265at 1448.100 kb on + strand, within PP_1265at 1448.101 kb on - strand, within PP_1265at 1448.101 kb on - strand, within PP_1265at 1448.262 kb on + strandat 1448.362 kb on + strandat 1448.362 kb on + strandat 1448.362 kb on + strandat 1448.362 kb on + strandat 1448.362 kb on + strandat 1448.362 kb on + strandat 1448.363 kb on - strandat 1448.363 kb on - strandat 1448.363 kb on - strandat 1448.363 kb on - strandat 1448.450 kb on + strand, within PP_1266at 1448.451 kb on - strand, within PP_1266at 1448.451 kb on - strand, within PP_1266at 1448.515 kb on + strand, within PP_1266at 1448.516 kb on - strandat 1448.681 kb on - strand, within PP_1266at 1448.730 kb on + strand, within PP_1266at 1448.731 kb on - strand, within PP_1266at 1448.731 kb on - strand, within PP_1266at 1448.731 kb on - strand, within PP_1266at 1448.758 kb on + strand, within PP_1266at 1448.759 kb on - strand, within PP_1266at 1448.791 kb on + strand, within PP_1266at 1448.792 kb on - strand, within PP_1266at 1448.792 kb on - strand, within PP_1266at 1448.848 kb on + strand, within PP_1266at 1448.965 kb on + strand, within PP_1266at 1448.965 kb on + strand, within PP_1266at 1448.965 kb on + strand, within PP_1266at 1448.965 kb on + strand, within PP_1266at 1448.966 kb on - strand, within PP_1266at 1448.966 kb on - strand, within PP_1266at 1448.966 kb on - strand, within PP_1266at 1448.966 kb on - strand, within PP_1266at 1448.966 kb on - strand, within PP_1266at 1449.111 kb on + strandat 1449.112 kb on - strandat 1449.112 kb on - strandat 1449.120 kb on - strandat 1449.199 kb on + strandat 1449.200 kb on - strandat 1449.200 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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1,447,136 + PP_1264 0.57 -0.4
1,447,137 - PP_1264 0.57 +0.4
1,447,197 + PP_1264 0.59 -0.3
1,447,197 + PP_1264 0.59 -4.2
1,447,197 + PP_1264 0.59 +0.1
1,447,198 - PP_1264 0.59 -1.1
1,447,198 - PP_1264 0.59 -0.2
1,447,198 - PP_1264 0.59 +1.8
1,447,389 - PP_1264 0.68 +3.7
1,447,466 + PP_1264 0.72 +0.4
1,447,467 - PP_1264 0.72 +2.9
1,447,484 + PP_1264 0.73 -1.9
1,447,484 + PP_1264 0.73 -1.0
1,447,485 - PP_1264 0.73 +1.2
1,447,676 + PP_1264 0.81 -1.4
1,447,677 - PP_1264 0.81 -0.8
1,448,001 - -0.3
1,448,017 + -0.1
1,448,017 + -0.9
1,448,018 - -3.0
1,448,018 - -0.3
1,448,018 - +1.0
1,448,100 + PP_1265 0.15 +0.3
1,448,100 + PP_1265 0.15 -1.2
1,448,100 + PP_1265 0.15 -0.5
1,448,100 + PP_1265 0.15 +0.9
1,448,100 + PP_1265 0.15 -1.4
1,448,100 + PP_1265 0.15 +0.2
1,448,100 + PP_1265 0.15 +0.6
1,448,101 - PP_1265 0.15 -1.2
1,448,101 - PP_1265 0.15 -0.0
1,448,262 + +0.7
1,448,362 + +1.0
1,448,362 + +1.4
1,448,362 + -0.3
1,448,362 + -0.4
1,448,362 + -3.0
1,448,362 + -1.3
1,448,363 - -3.1
1,448,363 - +1.4
1,448,363 - -3.6
1,448,363 - +0.6
1,448,450 + PP_1266 0.20 +0.9
1,448,451 - PP_1266 0.20 +0.9
1,448,451 - PP_1266 0.20 +1.7
1,448,515 + PP_1266 0.27 -2.6
1,448,516 - -0.2
1,448,681 - PP_1266 0.46 -1.9
1,448,730 + PP_1266 0.52 -2.3
1,448,731 - PP_1266 0.52 -2.8
1,448,731 - PP_1266 0.52 -1.8
1,448,731 - PP_1266 0.52 +0.5
1,448,758 + PP_1266 0.55 +1.0
1,448,759 - PP_1266 0.56 +1.1
1,448,791 + PP_1266 0.59 +1.2
1,448,792 - PP_1266 0.59 +0.7
1,448,792 - PP_1266 0.59 +0.7
1,448,848 + PP_1266 0.66 +0.3
1,448,965 + PP_1266 0.79 +1.4
1,448,965 + PP_1266 0.79 -0.3
1,448,965 + PP_1266 0.79 -2.2
1,448,965 + PP_1266 0.79 +0.8
1,448,966 - PP_1266 0.80 +1.2
1,448,966 - PP_1266 0.80 +0.2
1,448,966 - PP_1266 0.80 +0.4
1,448,966 - PP_1266 0.80 +0.1
1,448,966 - PP_1266 0.80 -1.2
1,449,111 + +0.0
1,449,112 - -1.0
1,449,112 - +0.9
1,449,120 - -0.6
1,449,199 + +1.9
1,449,200 - -0.5
1,449,200 - +1.2

Or see this region's nucleotide sequence