Strain Fitness in Pseudomonas putida KT2440 around PP_1116

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5463 and PP_5464 are separated by 341 nucleotidesPP_5464 and PP_1116 are separated by 204 nucleotidesPP_1116 and PP_5465 are separated by 594 nucleotides PP_5463: PP_5463 - conserved protein of unknown function, at 1,275,115 to 1,275,675 _5463 PP_5464: PP_5464 - protein of unknown function, at 1,276,017 to 1,276,454 _5464 PP_1116: PP_1116 - Site-specific recombinase, resolvase family, at 1,276,659 to 1,277,369 _1116 PP_5465: PP_5465 - conserved protein of unknown function, at 1,277,964 to 1,278,173 _5465 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1275.703 kb on + strandat 1275.703 kb on + strandat 1275.813 kb on + strandat 1275.814 kb on - strandat 1275.814 kb on - strandat 1275.814 kb on - strandat 1275.903 kb on - strandat 1275.927 kb on - strandat 1275.947 kb on + strandat 1275.966 kb on + strandat 1275.994 kb on + strandat 1275.994 kb on + strandat 1275.994 kb on + strandat 1275.994 kb on + strandat 1275.995 kb on - strandat 1276.079 kb on + strand, within PP_5464at 1276.079 kb on + strand, within PP_5464at 1276.079 kb on + strand, within PP_5464at 1276.080 kb on - strand, within PP_5464at 1276.080 kb on - strandat 1276.099 kb on + strand, within PP_5464at 1276.099 kb on + strand, within PP_5464at 1276.099 kb on + strand, within PP_5464at 1276.100 kb on - strand, within PP_5464at 1276.100 kb on - strand, within PP_5464at 1276.100 kb on - strand, within PP_5464at 1276.148 kb on + strand, within PP_5464at 1276.148 kb on + strand, within PP_5464at 1276.148 kb on + strand, within PP_5464at 1276.155 kb on + strand, within PP_5464at 1276.197 kb on + strand, within PP_5464at 1276.197 kb on + strand, within PP_5464at 1276.197 kb on + strand, within PP_5464at 1276.198 kb on - strand, within PP_5464at 1276.198 kb on - strand, within PP_5464at 1276.198 kb on - strand, within PP_5464at 1276.198 kb on - strand, within PP_5464at 1276.198 kb on - strand, within PP_5464at 1276.198 kb on - strand, within PP_5464at 1276.212 kb on + strand, within PP_5464at 1276.213 kb on - strand, within PP_5464at 1276.270 kb on - strand, within PP_5464at 1276.308 kb on + strand, within PP_5464at 1276.308 kb on + strand, within PP_5464at 1276.309 kb on - strand, within PP_5464at 1276.345 kb on - strand, within PP_5464at 1276.366 kb on + strand, within PP_5464at 1276.377 kb on + strand, within PP_5464at 1276.377 kb on + strand, within PP_5464at 1276.378 kb on - strand, within PP_5464at 1276.408 kb on + strand, within PP_5464at 1276.409 kb on - strand, within PP_5464at 1276.428 kb on + strandat 1276.429 kb on - strandat 1276.518 kb on - strandat 1276.518 kb on - strandat 1276.544 kb on - strandat 1276.585 kb on + strandat 1276.586 kb on - strandat 1276.586 kb on - strandat 1276.598 kb on - strandat 1276.638 kb on + strandat 1276.639 kb on - strandat 1276.648 kb on - strandat 1276.651 kb on - strandat 1276.651 kb on - strandat 1276.660 kb on + strandat 1276.660 kb on + strandat 1276.660 kb on + strandat 1276.660 kb on + strandat 1276.661 kb on - strandat 1276.661 kb on - strandat 1276.661 kb on - strandat 1276.695 kb on + strandat 1276.695 kb on + strandat 1276.730 kb on + strand, within PP_1116at 1276.761 kb on + strand, within PP_1116at 1276.762 kb on - strand, within PP_1116at 1276.829 kb on - strand, within PP_1116at 1276.847 kb on + strand, within PP_1116at 1276.847 kb on + strand, within PP_1116at 1276.847 kb on + strand, within PP_1116at 1276.869 kb on - strand, within PP_1116at 1276.869 kb on - strand, within PP_1116at 1276.869 kb on - strand, within PP_1116at 1276.933 kb on - strand, within PP_1116at 1277.094 kb on + strand, within PP_1116at 1277.095 kb on - strand, within PP_1116at 1277.288 kb on - strand, within PP_1116at 1277.288 kb on - strand, within PP_1116at 1277.310 kb on + strandat 1277.310 kb on + strandat 1277.336 kb on + strandat 1277.340 kb on + strandat 1277.341 kb on - strandat 1277.350 kb on + strandat 1277.351 kb on - strandat 1277.389 kb on - strandat 1277.444 kb on - strandat 1277.646 kb on + strandat 1277.677 kb on - strandat 1277.677 kb on - strandat 1277.677 kb on - strandat 1277.677 kb on - strandat 1277.677 kb on - strandat 1277.719 kb on + strandat 1277.753 kb on - strandat 1277.769 kb on + strandat 1277.797 kb on + strandat 1277.798 kb on - strandat 1277.814 kb on + strandat 1277.897 kb on - strandat 1277.930 kb on - strandat 1277.965 kb on + strandat 1277.967 kb on + strandat 1277.967 kb on + strandat 1277.967 kb on + strandat 1277.967 kb on + strandat 1277.968 kb on - strandat 1277.968 kb on - strandat 1277.968 kb on - strandat 1278.039 kb on + strand, within PP_5465at 1278.039 kb on + strand, within PP_5465at 1278.039 kb on + strand, within PP_5465at 1278.040 kb on - strand, within PP_5465at 1278.057 kb on - strand, within PP_5465at 1278.087 kb on + strand, within PP_5465at 1278.097 kb on - strand, within PP_5465at 1278.126 kb on + strand, within PP_5465at 1278.127 kb on - strand, within PP_5465at 1278.127 kb on - strand, within PP_5465at 1278.132 kb on + strand, within PP_5465at 1278.132 kb on + strand, within PP_5465at 1278.133 kb on - strand, within PP_5465at 1278.138 kb on + strand, within PP_5465at 1278.138 kb on + strand, within PP_5465at 1278.138 kb on + strand, within PP_5465at 1278.139 kb on - strand, within PP_5465at 1278.139 kb on - strand, within PP_5465at 1278.139 kb on - strand, within PP_5465at 1278.139 kb on - strand, within PP_5465at 1278.139 kb on - strand, within PP_5465at 1278.311 kb on + strandat 1278.311 kb on + strandat 1278.345 kb on + strandat 1278.352 kb on + strandat 1278.353 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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1,275,703 + +1.6
1,275,703 + +1.2
1,275,813 + -0.4
1,275,814 - +0.1
1,275,814 - +0.4
1,275,814 - +0.9
1,275,903 - +1.4
1,275,927 - +2.1
1,275,947 + +1.2
1,275,966 + -1.4
1,275,994 + -3.4
1,275,994 + +0.7
1,275,994 + -0.2
1,275,994 + -2.3
1,275,995 - +1.0
1,276,079 + PP_5464 0.14 +1.5
1,276,079 + PP_5464 0.14 -0.9
1,276,079 + PP_5464 0.14 -2.4
1,276,080 - PP_5464 0.14 +0.4
1,276,080 - +0.6
1,276,099 + PP_5464 0.19 +1.2
1,276,099 + PP_5464 0.19 +0.7
1,276,099 + PP_5464 0.19 -0.6
1,276,100 - PP_5464 0.19 +1.3
1,276,100 - PP_5464 0.19 -1.8
1,276,100 - PP_5464 0.19 -1.8
1,276,148 + PP_5464 0.30 +1.1
1,276,148 + PP_5464 0.30 -3.2
1,276,148 + PP_5464 0.30 +0.3
1,276,155 + PP_5464 0.32 -0.4
1,276,197 + PP_5464 0.41 +0.7
1,276,197 + PP_5464 0.41 -3.7
1,276,197 + PP_5464 0.41 +0.3
1,276,198 - PP_5464 0.41 -2.5
1,276,198 - PP_5464 0.41 -0.4
1,276,198 - PP_5464 0.41 -3.5
1,276,198 - PP_5464 0.41 +0.5
1,276,198 - PP_5464 0.41 -0.3
1,276,198 - PP_5464 0.41 -2.7
1,276,212 + PP_5464 0.45 +0.3
1,276,213 - PP_5464 0.45 -0.8
1,276,270 - PP_5464 0.58 -1.8
1,276,308 + PP_5464 0.66 +0.3
1,276,308 + PP_5464 0.66 -3.2
1,276,309 - PP_5464 0.67 +0.9
1,276,345 - PP_5464 0.75 +1.4
1,276,366 + PP_5464 0.80 +0.6
1,276,377 + PP_5464 0.82 +1.6
1,276,377 + PP_5464 0.82 -0.8
1,276,378 - PP_5464 0.82 +2.1
1,276,408 + PP_5464 0.89 +0.4
1,276,409 - PP_5464 0.89 +1.0
1,276,428 + -1.5
1,276,429 - +0.0
1,276,518 - -0.8
1,276,518 - -3.9
1,276,544 - +1.4
1,276,585 + +1.0
1,276,586 - +1.6
1,276,586 - -1.2
1,276,598 - +2.2
1,276,638 + -1.4
1,276,639 - -0.0
1,276,648 - +0.7
1,276,651 - +0.1
1,276,651 - -0.4
1,276,660 + -0.3
1,276,660 + +0.5
1,276,660 + -3.6
1,276,660 + -1.2
1,276,661 - +0.1
1,276,661 - -3.3
1,276,661 - -1.8
1,276,695 + -0.5
1,276,695 + +0.8
1,276,730 + PP_1116 0.10 -4.1
1,276,761 + PP_1116 0.14 +0.5
1,276,762 - PP_1116 0.14 -0.7
1,276,829 - PP_1116 0.24 +1.5
1,276,847 + PP_1116 0.26 -3.9
1,276,847 + PP_1116 0.26 -2.9
1,276,847 + PP_1116 0.26 -3.4
1,276,869 - PP_1116 0.30 +0.7
1,276,869 - PP_1116 0.30 +0.3
1,276,869 - PP_1116 0.30 -2.4
1,276,933 - PP_1116 0.39 -3.4
1,277,094 + PP_1116 0.61 -1.7
1,277,095 - PP_1116 0.61 -3.5
1,277,288 - PP_1116 0.88 -2.9
1,277,288 - PP_1116 0.88 +0.8
1,277,310 + -3.0
1,277,310 + +1.8
1,277,336 + +0.9
1,277,340 + -0.9
1,277,341 - -2.1
1,277,350 + +1.2
1,277,351 - +0.9
1,277,389 - +1.1
1,277,444 - -0.0
1,277,646 + +0.4
1,277,677 - -0.4
1,277,677 - -0.8
1,277,677 - +0.5
1,277,677 - +0.4
1,277,677 - -0.2
1,277,719 + -3.9
1,277,753 - -2.9
1,277,769 + -3.7
1,277,797 + -0.5
1,277,798 - -0.2
1,277,814 + +1.0
1,277,897 - -0.1
1,277,930 - -0.2
1,277,965 + -1.4
1,277,967 + +1.2
1,277,967 + +0.8
1,277,967 + +1.5
1,277,967 + +0.1
1,277,968 - -0.7
1,277,968 - +0.6
1,277,968 - -3.3
1,278,039 + PP_5465 0.36 -0.9
1,278,039 + PP_5465 0.36 -1.9
1,278,039 + PP_5465 0.36 -1.8
1,278,040 - PP_5465 0.36 -1.7
1,278,057 - PP_5465 0.44 -2.5
1,278,087 + PP_5465 0.59 +2.0
1,278,097 - PP_5465 0.63 -3.7
1,278,126 + PP_5465 0.77 +1.8
1,278,127 - PP_5465 0.78 +1.3
1,278,127 - PP_5465 0.78 +0.8
1,278,132 + PP_5465 0.80 +0.2
1,278,132 + PP_5465 0.80 -0.7
1,278,133 - PP_5465 0.80 -1.5
1,278,138 + PP_5465 0.83 +0.3
1,278,138 + PP_5465 0.83 -0.6
1,278,138 + PP_5465 0.83 -2.2
1,278,139 - PP_5465 0.83 +1.1
1,278,139 - PP_5465 0.83 +0.4
1,278,139 - PP_5465 0.83 +0.3
1,278,139 - PP_5465 0.83 -0.9
1,278,139 - PP_5465 0.83 +1.8
1,278,311 + +0.9
1,278,311 + +0.9
1,278,345 + -0.3
1,278,352 + +0.9
1,278,353 - -2.1

Or see this region's nucleotide sequence