Experiment: Growth at pH9 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4423 and PP_4424 are separated by 202 nucleotides PP_4424 and PP_4425 are separated by 50 nucleotides PP_4425 and PP_4426 are separated by 98 nucleotides PP_4426 and PP_4427 overlap by 1 nucleotides
PP_4423: PP_4423 - conserved protein of unknown function, at 5,019,116 to 5,020,111
_4423
PP_4424: PP_4424 - Uncharacterized HTH-type transcriptional regulator y4tD, at 5,020,314 to 5,020,781
_4424
PP_4425: PP_4425 - putative amino-acid ABC transporter ATP-binding protein y4tH, at 5,020,832 to 5,021,599
_4425
PP_4426: PP_4426 - Amino acid ABC transporter, permease protein, at 5,021,698 to 5,022,354
_4426
PP_4427: PP_4427 - Amino acid ABC transporter, permease protein, at 5,022,354 to 5,023,010
_4427
Position (kb) 5020
5021
5022 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5019.927 kb on + strand, within PP_4423 at 5020.116 kb on + strand at 5020.117 kb on - strand at 5020.123 kb on + strand at 5020.142 kb on + strand at 5020.215 kb on + strand at 5020.246 kb on + strand at 5020.255 kb on + strand at 5020.295 kb on + strand at 5020.433 kb on + strand, within PP_4424 at 5020.608 kb on + strand, within PP_4424 at 5020.655 kb on + strand, within PP_4424 at 5020.780 kb on - strand at 5020.935 kb on + strand, within PP_4425 at 5020.935 kb on + strand, within PP_4425 at 5020.936 kb on - strand, within PP_4425 at 5020.988 kb on - strand, within PP_4425 at 5020.993 kb on + strand, within PP_4425 at 5020.993 kb on + strand, within PP_4425 at 5020.993 kb on + strand, within PP_4425 at 5020.994 kb on - strand, within PP_4425 at 5020.994 kb on - strand, within PP_4425 at 5020.994 kb on - strand, within PP_4425 at 5021.008 kb on + strand, within PP_4425 at 5021.009 kb on - strand, within PP_4425 at 5021.009 kb on - strand, within PP_4425 at 5021.126 kb on + strand, within PP_4425 at 5021.127 kb on - strand, within PP_4425 at 5021.169 kb on + strand, within PP_4425 at 5021.243 kb on + strand at 5021.291 kb on - strand, within PP_4425 at 5021.321 kb on + strand, within PP_4425 at 5021.321 kb on + strand, within PP_4425 at 5021.322 kb on - strand, within PP_4425 at 5021.322 kb on - strand, within PP_4425 at 5021.322 kb on - strand, within PP_4425 at 5021.330 kb on + strand, within PP_4425 at 5021.330 kb on + strand, within PP_4425 at 5021.330 kb on + strand, within PP_4425 at 5021.569 kb on - strand at 5021.593 kb on + strand at 5021.593 kb on + strand at 5021.667 kb on - strand at 5021.700 kb on - strand at 5021.777 kb on - strand, within PP_4426 at 5021.857 kb on - strand, within PP_4426 at 5021.875 kb on - strand, within PP_4426 at 5022.033 kb on - strand, within PP_4426 at 5022.035 kb on - strand, within PP_4426 at 5022.061 kb on + strand, within PP_4426 at 5022.292 kb on - strand at 5022.326 kb on - strand at 5022.333 kb on - strand at 5022.333 kb on - strand at 5022.433 kb on - strand, within PP_4427 at 5022.439 kb on + strand, within PP_4427 at 5022.454 kb on - strand, within PP_4427 at 5022.530 kb on + strand, within PP_4427 at 5022.531 kb on - strand, within PP_4427
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate remove 5,019,927 + PP_4423 0.81 -0.0 5,020,116 + +0.1 5,020,117 - +1.0 5,020,123 + +0.5 5,020,142 + -1.7 5,020,215 + +0.6 5,020,246 + -2.4 5,020,255 + -0.5 5,020,295 + +0.5 5,020,433 + PP_4424 0.25 -3.0 5,020,608 + PP_4424 0.63 -3.3 5,020,655 + PP_4424 0.73 -3.8 5,020,780 - +0.2 5,020,935 + PP_4425 0.13 -0.0 5,020,935 + PP_4425 0.13 -0.2 5,020,936 - PP_4425 0.14 +0.8 5,020,988 - PP_4425 0.20 +0.8 5,020,993 + PP_4425 0.21 +1.5 5,020,993 + PP_4425 0.21 +0.7 5,020,993 + PP_4425 0.21 -0.1 5,020,994 - PP_4425 0.21 +0.1 5,020,994 - PP_4425 0.21 +0.6 5,020,994 - PP_4425 0.21 +1.8 5,021,008 + PP_4425 0.23 +0.3 5,021,009 - PP_4425 0.23 -1.5 5,021,009 - PP_4425 0.23 -1.6 5,021,126 + PP_4425 0.38 -2.2 5,021,127 - PP_4425 0.38 +0.6 5,021,169 + PP_4425 0.44 -0.9 5,021,243 + +1.4 5,021,291 - PP_4425 0.60 -1.0 5,021,321 + PP_4425 0.64 +1.7 5,021,321 + PP_4425 0.64 -1.7 5,021,322 - PP_4425 0.64 -0.2 5,021,322 - PP_4425 0.64 -0.9 5,021,322 - PP_4425 0.64 +0.5 5,021,330 + PP_4425 0.65 -1.7 5,021,330 + PP_4425 0.65 +1.2 5,021,330 + PP_4425 0.65 +0.7 5,021,569 - +0.9 5,021,593 + -1.8 5,021,593 + -0.5 5,021,667 - -0.8 5,021,700 - -0.5 5,021,777 - PP_4426 0.12 +1.0 5,021,857 - PP_4426 0.24 +0.9 5,021,875 - PP_4426 0.27 +0.9 5,022,033 - PP_4426 0.51 -0.9 5,022,035 - PP_4426 0.51 +0.6 5,022,061 + PP_4426 0.55 -0.3 5,022,292 - +1.1 5,022,326 - +1.0 5,022,333 - +0.8 5,022,333 - +1.1 5,022,433 - PP_4427 0.12 +0.4 5,022,439 + PP_4427 0.13 -0.6 5,022,454 - PP_4427 0.15 +1.1 5,022,530 + PP_4427 0.27 +0.1 5,022,531 - PP_4427 0.27 -1.2
Or see this region's nucleotide sequence