Strain Fitness in Pseudomonas putida KT2440 around PP_2064

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5501 and PP_2064 are separated by 133 nucleotidesPP_2064 and PP_2065 overlap by 4 nucleotides PP_5501: PP_5501 - conserved protein of unknown function, at 2,345,613 to 2,346,566 _5501 PP_2064: PP_2064 - Multidrug efflux RND membrane fusion protein, at 2,346,700 to 2,347,797 _2064 PP_2065: PP_2065 - Multidrug efflux RND transporter, at 2,347,794 to 2,350,877 _2065 Position (kb) 2346 2347 2348Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2345.726 kb on + strand, within PP_5501at 2345.728 kb on + strand, within PP_5501at 2345.773 kb on - strand, within PP_5501at 2345.773 kb on - strand, within PP_5501at 2345.866 kb on + strand, within PP_5501at 2345.866 kb on + strand, within PP_5501at 2345.867 kb on - strand, within PP_5501at 2345.875 kb on - strand, within PP_5501at 2346.010 kb on - strand, within PP_5501at 2346.010 kb on - strand, within PP_5501at 2346.065 kb on + strand, within PP_5501at 2346.117 kb on + strand, within PP_5501at 2346.202 kb on - strand, within PP_5501at 2346.240 kb on + strand, within PP_5501at 2346.240 kb on + strand, within PP_5501at 2346.276 kb on - strand, within PP_5501at 2346.277 kb on + strand, within PP_5501at 2346.277 kb on + strand, within PP_5501at 2346.278 kb on - strand, within PP_5501at 2346.278 kb on - strand, within PP_5501at 2346.278 kb on - strand, within PP_5501at 2346.293 kb on + strand, within PP_5501at 2346.304 kb on + strand, within PP_5501at 2346.305 kb on - strand, within PP_5501at 2346.321 kb on - strand, within PP_5501at 2346.325 kb on - strand, within PP_5501at 2346.340 kb on + strand, within PP_5501at 2346.345 kb on + strandat 2346.345 kb on + strand, within PP_5501at 2346.345 kb on + strand, within PP_5501at 2346.385 kb on + strand, within PP_5501at 2346.394 kb on + strand, within PP_5501at 2346.395 kb on - strand, within PP_5501at 2346.395 kb on - strand, within PP_5501at 2346.395 kb on - strand, within PP_5501at 2346.419 kb on + strand, within PP_5501at 2346.419 kb on + strand, within PP_5501at 2346.420 kb on - strand, within PP_5501at 2346.420 kb on - strand, within PP_5501at 2346.420 kb on - strand, within PP_5501at 2346.420 kb on - strand, within PP_5501at 2346.420 kb on - strand, within PP_5501at 2346.430 kb on + strand, within PP_5501at 2346.430 kb on + strand, within PP_5501at 2346.430 kb on + strand, within PP_5501at 2346.430 kb on + strand, within PP_5501at 2346.430 kb on + strand, within PP_5501at 2346.431 kb on - strand, within PP_5501at 2346.475 kb on + strandat 2346.475 kb on + strandat 2346.475 kb on + strandat 2346.475 kb on + strandat 2346.476 kb on - strandat 2346.476 kb on - strandat 2346.506 kb on + strandat 2346.632 kb on + strandat 2346.647 kb on - strandat 2346.716 kb on + strandat 2346.928 kb on - strand, within PP_2064at 2346.928 kb on - strand, within PP_2064at 2347.041 kb on + strand, within PP_2064at 2347.240 kb on + strand, within PP_2064at 2347.443 kb on - strand, within PP_2064at 2347.485 kb on + strand, within PP_2064at 2347.486 kb on - strand, within PP_2064at 2347.486 kb on - strand, within PP_2064at 2347.489 kb on + strand, within PP_2064at 2347.489 kb on + strand, within PP_2064at 2347.489 kb on + strand, within PP_2064at 2347.489 kb on + strand, within PP_2064at 2347.489 kb on + strand, within PP_2064at 2347.490 kb on - strand, within PP_2064at 2347.490 kb on - strand, within PP_2064at 2347.490 kb on - strand, within PP_2064at 2347.490 kb on - strand, within PP_2064at 2347.490 kb on - strand, within PP_2064at 2347.558 kb on + strand, within PP_2064at 2347.558 kb on + strand, within PP_2064at 2347.558 kb on + strand, within PP_2064at 2347.929 kb on - strandat 2348.142 kb on + strand, within PP_2065at 2348.164 kb on - strand, within PP_2065at 2348.212 kb on - strand, within PP_2065at 2348.212 kb on - strand, within PP_2065at 2348.259 kb on + strand, within PP_2065at 2348.259 kb on + strand, within PP_2065at 2348.260 kb on - strand, within PP_2065at 2348.413 kb on + strand, within PP_2065at 2348.428 kb on - strand, within PP_2065at 2348.428 kb on - strand, within PP_2065at 2348.461 kb on - strand, within PP_2065at 2348.461 kb on - strand, within PP_2065at 2348.688 kb on - strand, within PP_2065at 2348.736 kb on + strand, within PP_2065at 2348.736 kb on + strand, within PP_2065

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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2,345,726 + PP_5501 0.12 +0.3
2,345,728 + PP_5501 0.12 -0.6
2,345,773 - PP_5501 0.17 -0.4
2,345,773 - PP_5501 0.17 +2.3
2,345,866 + PP_5501 0.27 -0.9
2,345,866 + PP_5501 0.27 +0.7
2,345,867 - PP_5501 0.27 -0.1
2,345,875 - PP_5501 0.27 +1.1
2,346,010 - PP_5501 0.42 +1.1
2,346,010 - PP_5501 0.42 +1.1
2,346,065 + PP_5501 0.47 -0.4
2,346,117 + PP_5501 0.53 -0.1
2,346,202 - PP_5501 0.62 -0.4
2,346,240 + PP_5501 0.66 +0.6
2,346,240 + PP_5501 0.66 +0.5
2,346,276 - PP_5501 0.69 -0.6
2,346,277 + PP_5501 0.70 -3.1
2,346,277 + PP_5501 0.70 -3.1
2,346,278 - PP_5501 0.70 +0.0
2,346,278 - PP_5501 0.70 +0.1
2,346,278 - PP_5501 0.70 -1.0
2,346,293 + PP_5501 0.71 -1.7
2,346,304 + PP_5501 0.72 +0.8
2,346,305 - PP_5501 0.73 +0.6
2,346,321 - PP_5501 0.74 -1.5
2,346,325 - PP_5501 0.75 +1.0
2,346,340 + PP_5501 0.76 -0.4
2,346,345 + +0.9
2,346,345 + PP_5501 0.77 +0.3
2,346,345 + PP_5501 0.77 -2.7
2,346,385 + PP_5501 0.81 -0.6
2,346,394 + PP_5501 0.82 +0.7
2,346,395 - PP_5501 0.82 -0.8
2,346,395 - PP_5501 0.82 +0.5
2,346,395 - PP_5501 0.82 -0.7
2,346,419 + PP_5501 0.84 +1.3
2,346,419 + PP_5501 0.84 -1.2
2,346,420 - PP_5501 0.85 +0.5
2,346,420 - PP_5501 0.85 -0.7
2,346,420 - PP_5501 0.85 +0.3
2,346,420 - PP_5501 0.85 -0.5
2,346,420 - PP_5501 0.85 +0.5
2,346,430 + PP_5501 0.86 -1.1
2,346,430 + PP_5501 0.86 +0.7
2,346,430 + PP_5501 0.86 +0.1
2,346,430 + PP_5501 0.86 +0.8
2,346,430 + PP_5501 0.86 -0.8
2,346,431 - PP_5501 0.86 -3.6
2,346,475 + +0.8
2,346,475 + -0.2
2,346,475 + -0.1
2,346,475 + +0.1
2,346,476 - -3.4
2,346,476 - -2.3
2,346,506 + +0.7
2,346,632 + +1.6
2,346,647 - +0.4
2,346,716 + +1.7
2,346,928 - PP_2064 0.21 +1.0
2,346,928 - PP_2064 0.21 -1.5
2,347,041 + PP_2064 0.31 +1.4
2,347,240 + PP_2064 0.49 -1.5
2,347,443 - PP_2064 0.68 -0.9
2,347,485 + PP_2064 0.71 +0.7
2,347,486 - PP_2064 0.72 +0.2
2,347,486 - PP_2064 0.72 -1.6
2,347,489 + PP_2064 0.72 -0.9
2,347,489 + PP_2064 0.72 -2.6
2,347,489 + PP_2064 0.72 -0.6
2,347,489 + PP_2064 0.72 +0.9
2,347,489 + PP_2064 0.72 +0.4
2,347,490 - PP_2064 0.72 +1.0
2,347,490 - PP_2064 0.72 -1.0
2,347,490 - PP_2064 0.72 -0.0
2,347,490 - PP_2064 0.72 -1.3
2,347,490 - PP_2064 0.72 -2.2
2,347,558 + PP_2064 0.78 -0.9
2,347,558 + PP_2064 0.78 -0.5
2,347,558 + PP_2064 0.78 -0.9
2,347,929 - -0.4
2,348,142 + PP_2065 0.11 -3.4
2,348,164 - PP_2065 0.12 -0.4
2,348,212 - PP_2065 0.14 +0.7
2,348,212 - PP_2065 0.14 +1.0
2,348,259 + PP_2065 0.15 +1.4
2,348,259 + PP_2065 0.15 +0.2
2,348,260 - PP_2065 0.15 +0.8
2,348,413 + PP_2065 0.20 +0.8
2,348,428 - PP_2065 0.21 -0.5
2,348,428 - PP_2065 0.21 -1.3
2,348,461 - PP_2065 0.22 -0.3
2,348,461 - PP_2065 0.22 +0.5
2,348,688 - PP_2065 0.29 +0.3
2,348,736 + PP_2065 0.31 -1.9
2,348,736 + PP_2065 0.31 +0.7

Or see this region's nucleotide sequence