Strain Fitness in Pseudomonas putida KT2440 around PP_1302

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1301 and PP_1302 are separated by 120 nucleotidesPP_1302 and PP_1303 are separated by 202 nucleotides PP_1301: PP_1301 - quality control serine endoprotease DegS, at 1,487,114 to 1,488,322 _1301 PP_1302: PP_1302 - putative metal-binding hydrolase-oxidase enzyme, at 1,488,443 to 1,489,201 _1302 PP_1303: PP_1303 - Sulfate adenylyltransferase subunit 2, at 1,489,404 to 1,490,321 _1303 Position (kb) 1488 1489 1490Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1487.548 kb on + strand, within PP_1301at 1487.548 kb on + strand, within PP_1301at 1487.549 kb on - strandat 1487.640 kb on + strand, within PP_1301at 1487.640 kb on + strand, within PP_1301at 1487.640 kb on + strand, within PP_1301at 1487.640 kb on + strand, within PP_1301at 1487.640 kb on + strand, within PP_1301at 1487.641 kb on - strand, within PP_1301at 1487.876 kb on + strand, within PP_1301at 1487.925 kb on + strand, within PP_1301at 1487.925 kb on + strand, within PP_1301at 1487.926 kb on - strand, within PP_1301at 1488.066 kb on + strand, within PP_1301at 1488.066 kb on + strand, within PP_1301at 1488.066 kb on + strand, within PP_1301at 1488.067 kb on - strand, within PP_1301at 1488.111 kb on + strand, within PP_1301at 1488.227 kb on + strandat 1488.227 kb on + strandat 1488.228 kb on - strandat 1488.235 kb on + strandat 1488.255 kb on + strandat 1488.255 kb on + strandat 1488.339 kb on - strandat 1488.372 kb on - strandat 1488.372 kb on - strandat 1488.384 kb on + strandat 1488.384 kb on + strandat 1488.512 kb on + strandat 1488.560 kb on - strand, within PP_1302at 1488.645 kb on - strand, within PP_1302at 1488.713 kb on - strand, within PP_1302at 1488.718 kb on + strand, within PP_1302at 1488.718 kb on + strand, within PP_1302at 1488.718 kb on + strand, within PP_1302at 1488.719 kb on - strand, within PP_1302at 1488.719 kb on - strand, within PP_1302at 1488.719 kb on - strand, within PP_1302at 1488.719 kb on - strand, within PP_1302at 1488.719 kb on - strand, within PP_1302at 1488.720 kb on + strand, within PP_1302at 1488.720 kb on + strand, within PP_1302at 1488.720 kb on + strand, within PP_1302at 1488.720 kb on + strand, within PP_1302at 1488.720 kb on + strand, within PP_1302at 1488.721 kb on - strand, within PP_1302at 1488.721 kb on - strand, within PP_1302at 1488.721 kb on - strand, within PP_1302at 1488.721 kb on - strand, within PP_1302at 1488.721 kb on - strand, within PP_1302at 1488.721 kb on - strand, within PP_1302at 1488.721 kb on - strand, within PP_1302at 1488.820 kb on - strand, within PP_1302at 1488.989 kb on + strand, within PP_1302at 1488.989 kb on + strand, within PP_1302at 1488.989 kb on + strand, within PP_1302at 1488.989 kb on + strand, within PP_1302at 1488.990 kb on - strand, within PP_1302at 1488.990 kb on - strand, within PP_1302at 1488.990 kb on - strand, within PP_1302at 1488.991 kb on + strand, within PP_1302at 1489.025 kb on + strand, within PP_1302at 1489.055 kb on + strand, within PP_1302at 1489.056 kb on - strand, within PP_1302at 1489.142 kb on + strandat 1489.232 kb on + strandat 1489.232 kb on + strandat 1489.233 kb on - strandat 1489.233 kb on - strandat 1489.233 kb on - strandat 1489.288 kb on - strandat 1489.320 kb on + strandat 1489.320 kb on + strandat 1489.321 kb on - strandat 1489.321 kb on - strandat 1489.324 kb on + strandat 1489.325 kb on - strandat 1489.325 kb on - strandat 1489.342 kb on + strandat 1489.380 kb on + strandat 1489.380 kb on + strandat 1489.380 kb on + strandat 1489.381 kb on - strandat 1489.381 kb on - strandat 1489.381 kb on - strandat 1489.381 kb on - strandat 1489.399 kb on + strandat 1489.399 kb on + strandat 1489.617 kb on + strand, within PP_1303at 1489.618 kb on - strand, within PP_1303at 1489.618 kb on - strand, within PP_1303at 1489.698 kb on - strand, within PP_1303at 1489.698 kb on - strand, within PP_1303at 1489.846 kb on - strand, within PP_1303at 1489.912 kb on - strand, within PP_1303at 1489.989 kb on + strand, within PP_1303at 1489.989 kb on + strand, within PP_1303at 1489.989 kb on + strand, within PP_1303at 1489.990 kb on - strand, within PP_1303at 1489.995 kb on + strand, within PP_1303at 1489.995 kb on + strand, within PP_1303at 1489.995 kb on + strand, within PP_1303at 1489.995 kb on + strand, within PP_1303at 1489.996 kb on - strand, within PP_1303at 1489.996 kb on - strand, within PP_1303at 1489.996 kb on - strand, within PP_1303at 1490.026 kb on - strand, within PP_1303at 1490.026 kb on - strand, within PP_1303

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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1,487,548 + PP_1301 0.36 +0.2
1,487,548 + PP_1301 0.36 -1.8
1,487,549 - +0.3
1,487,640 + PP_1301 0.44 -0.9
1,487,640 + PP_1301 0.44 +0.4
1,487,640 + PP_1301 0.44 +0.6
1,487,640 + PP_1301 0.44 +0.1
1,487,640 + PP_1301 0.44 -0.2
1,487,641 - PP_1301 0.44 +0.5
1,487,876 + PP_1301 0.63 +0.1
1,487,925 + PP_1301 0.67 +0.9
1,487,925 + PP_1301 0.67 +2.1
1,487,926 - PP_1301 0.67 +0.5
1,488,066 + PP_1301 0.79 +1.8
1,488,066 + PP_1301 0.79 +0.3
1,488,066 + PP_1301 0.79 -0.3
1,488,067 - PP_1301 0.79 +0.4
1,488,111 + PP_1301 0.82 -0.3
1,488,227 + -0.5
1,488,227 + -3.9
1,488,228 - +0.3
1,488,235 + -0.2
1,488,255 + +0.9
1,488,255 + +0.5
1,488,339 - +0.8
1,488,372 - -3.4
1,488,372 - -0.4
1,488,384 + +0.7
1,488,384 + +0.6
1,488,512 + +0.1
1,488,560 - PP_1302 0.15 +1.4
1,488,645 - PP_1302 0.27 +2.0
1,488,713 - PP_1302 0.36 +1.6
1,488,718 + PP_1302 0.36 +0.3
1,488,718 + PP_1302 0.36 +0.9
1,488,718 + PP_1302 0.36 +0.9
1,488,719 - PP_1302 0.36 +2.0
1,488,719 - PP_1302 0.36 +1.0
1,488,719 - PP_1302 0.36 +0.9
1,488,719 - PP_1302 0.36 +0.5
1,488,719 - PP_1302 0.36 -0.6
1,488,720 + PP_1302 0.36 +1.1
1,488,720 + PP_1302 0.36 +0.4
1,488,720 + PP_1302 0.36 +0.8
1,488,720 + PP_1302 0.36 +0.2
1,488,720 + PP_1302 0.36 +1.0
1,488,721 - PP_1302 0.37 +0.6
1,488,721 - PP_1302 0.37 +0.9
1,488,721 - PP_1302 0.37 +0.1
1,488,721 - PP_1302 0.37 -0.8
1,488,721 - PP_1302 0.37 -3.2
1,488,721 - PP_1302 0.37 +0.2
1,488,721 - PP_1302 0.37 +1.1
1,488,820 - PP_1302 0.50 +0.8
1,488,989 + PP_1302 0.72 +1.3
1,488,989 + PP_1302 0.72 -3.4
1,488,989 + PP_1302 0.72 +0.9
1,488,989 + PP_1302 0.72 -0.7
1,488,990 - PP_1302 0.72 +0.0
1,488,990 - PP_1302 0.72 +0.5
1,488,990 - PP_1302 0.72 -0.9
1,488,991 + PP_1302 0.72 +0.3
1,489,025 + PP_1302 0.77 -4.4
1,489,055 + PP_1302 0.81 +0.5
1,489,056 - PP_1302 0.81 -0.4
1,489,142 + +1.2
1,489,232 + +0.7
1,489,232 + +0.9
1,489,233 - -0.0
1,489,233 - -0.4
1,489,233 - +0.7
1,489,288 - -3.5
1,489,320 + -0.4
1,489,320 + -1.6
1,489,321 - -1.1
1,489,321 - -1.3
1,489,324 + -3.5
1,489,325 - +1.3
1,489,325 - -0.8
1,489,342 + -0.9
1,489,380 + -0.3
1,489,380 + +0.3
1,489,380 + -0.2
1,489,381 - -0.2
1,489,381 - -1.0
1,489,381 - -1.2
1,489,381 - -0.7
1,489,399 + -4.0
1,489,399 + -1.3
1,489,617 + PP_1303 0.23 -2.6
1,489,618 - PP_1303 0.23 +1.1
1,489,618 - PP_1303 0.23 +1.2
1,489,698 - PP_1303 0.32 -0.7
1,489,698 - PP_1303 0.32 +0.8
1,489,846 - PP_1303 0.48 +0.0
1,489,912 - PP_1303 0.55 +0.2
1,489,989 + PP_1303 0.64 -1.5
1,489,989 + PP_1303 0.64 -0.1
1,489,989 + PP_1303 0.64 -3.0
1,489,990 - PP_1303 0.64 -3.5
1,489,995 + PP_1303 0.64 -2.2
1,489,995 + PP_1303 0.64 -0.4
1,489,995 + PP_1303 0.64 -4.3
1,489,995 + PP_1303 0.64 -1.5
1,489,996 - PP_1303 0.64 -3.1
1,489,996 - PP_1303 0.64 -0.3
1,489,996 - PP_1303 0.64 -2.5
1,490,026 - PP_1303 0.68 -0.7
1,490,026 - PP_1303 0.68 -2.4

Or see this region's nucleotide sequence