Experiment: Growth at pH9 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0693 and PP_0694 overlap by 4 nucleotides PP_0694 and PP_0695 overlap by 11 nucleotides PP_0695 and PP_0696 are separated by 76 nucleotides PP_0696 and PP_0697 overlap by 4 nucleotides
PP_0693: PP_0693 - conserved protein of unknown function, at 804,498 to 807,329
_0693
PP_0694: PP_0694 - conserved protein of unknown function, at 807,326 to 808,033
_0694
PP_0695: PP_0695 - conserved protein of unknown function, at 808,023 to 809,357
_0695
PP_0696: PP_0696 - conserved protein of unknown function, at 809,434 to 810,309
_0696
PP_0697: PP_0697 - ribosomal-protein-S18-alanine N-acetyltransferase, at 810,306 to 810,761
_0697
Position (kb) 808
809
810 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 807.094 kb on + strand at 807.095 kb on - strand at 807.095 kb on - strand at 807.095 kb on - strand at 807.115 kb on + strand at 807.142 kb on + strand at 807.142 kb on + strand at 807.143 kb on - strand at 807.143 kb on - strand at 807.143 kb on - strand at 807.143 kb on - strand at 807.213 kb on - strand at 807.232 kb on + strand at 807.232 kb on + strand at 807.314 kb on - strand at 807.573 kb on + strand, within PP_0694 at 807.573 kb on + strand, within PP_0694 at 807.573 kb on + strand, within PP_0694 at 807.681 kb on + strand, within PP_0694 at 807.681 kb on + strand, within PP_0694 at 807.849 kb on + strand, within PP_0694 at 807.849 kb on + strand, within PP_0694 at 807.850 kb on - strand, within PP_0694 at 807.853 kb on - strand, within PP_0694 at 807.939 kb on + strand, within PP_0694 at 807.940 kb on - strand, within PP_0694 at 807.940 kb on - strand, within PP_0694 at 808.058 kb on + strand at 808.136 kb on - strand at 808.198 kb on + strand, within PP_0695 at 808.199 kb on - strand, within PP_0695 at 808.199 kb on - strand, within PP_0695 at 808.390 kb on + strand, within PP_0695 at 808.391 kb on - strand, within PP_0695 at 808.396 kb on + strand, within PP_0695 at 808.719 kb on + strand, within PP_0695 at 808.719 kb on + strand, within PP_0695 at 808.719 kb on + strand, within PP_0695 at 808.720 kb on - strand, within PP_0695 at 808.774 kb on + strand, within PP_0695 at 808.775 kb on - strand, within PP_0695 at 808.805 kb on - strand, within PP_0695 at 809.056 kb on + strand, within PP_0695 at 809.152 kb on - strand, within PP_0695 at 809.350 kb on + strand at 809.398 kb on + strand at 809.399 kb on - strand at 809.419 kb on + strand at 809.420 kb on - strand at 809.454 kb on - strand at 809.476 kb on + strand at 809.476 kb on + strand at 809.483 kb on + strand at 809.483 kb on + strand at 809.483 kb on + strand at 809.483 kb on + strand at 809.483 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate remove 807,094 + +0.1 807,095 - +1.3 807,095 - -2.8 807,095 - +0.5 807,115 + -1.0 807,142 + -2.8 807,142 + -1.1 807,143 - +0.3 807,143 - +0.4 807,143 - -0.5 807,143 - +0.8 807,213 - -0.3 807,232 + +0.4 807,232 + -1.9 807,314 - -0.7 807,573 + PP_0694 0.35 -0.3 807,573 + PP_0694 0.35 -2.7 807,573 + PP_0694 0.35 +0.6 807,681 + PP_0694 0.50 -0.1 807,681 + PP_0694 0.50 -0.3 807,849 + PP_0694 0.74 +0.3 807,849 + PP_0694 0.74 -2.5 807,850 - PP_0694 0.74 +0.6 807,853 - PP_0694 0.74 -2.6 807,939 + PP_0694 0.87 -0.7 807,940 - PP_0694 0.87 +0.1 807,940 - PP_0694 0.87 -0.6 808,058 + +0.9 808,136 - -0.5 808,198 + PP_0695 0.13 -1.7 808,199 - PP_0695 0.13 -0.8 808,199 - PP_0695 0.13 +0.2 808,390 + PP_0695 0.27 +0.9 808,391 - PP_0695 0.28 +0.1 808,396 + PP_0695 0.28 +0.4 808,719 + PP_0695 0.52 -2.7 808,719 + PP_0695 0.52 -1.9 808,719 + PP_0695 0.52 -0.7 808,720 - PP_0695 0.52 -2.9 808,774 + PP_0695 0.56 -3.9 808,775 - PP_0695 0.56 -1.0 808,805 - PP_0695 0.59 -0.8 809,056 + PP_0695 0.77 +1.0 809,152 - PP_0695 0.85 -2.5 809,350 + +1.3 809,398 + +1.4 809,399 - -0.5 809,419 + -0.3 809,420 - -0.2 809,454 - +0.0 809,476 + -2.1 809,476 + -2.7 809,483 + +0.6 809,483 + +0.2 809,483 + +0.8 809,483 + -0.3 809,483 + +0.4
Or see this region's nucleotide sequence