Strain Fitness in Escherichia coli BW25113 around b2632

Experiment: Papa dilution 10-1 cacl2 maltose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfjN and yfjO overlap by 8 nucleotidesyfjO and yfjP are separated by 354 nucleotidesyfjP and yfjQ are separated by 91 nucleotides b2630: yfjN - CP4-57 prophage; RNase LS (NCBI), at 2,763,940 to 2,765,013 yfjN b2631: yfjO - orf, hypothetical protein (VIMSS), at 2,765,006 to 2,765,377 yfjO b2632: yfjP - CP4-57 prophage; predicted GTP-binding protein (NCBI), at 2,765,732 to 2,766,595 yfjP b2633: yfjQ - CP4-57 prophage; predicted protein (NCBI), at 2,766,687 to 2,767,508 yfjQ Position (kb) 2765 2766 2767Strain fitness (log2 ratio) -2 -1 0 1 2at 2764.748 kb on + strand, within yfjNat 2764.761 kb on - strand, within yfjNat 2764.908 kb on + strandat 2764.976 kb on - strandat 2765.212 kb on - strandat 2765.336 kb on - strand, within yfjOat 2765.354 kb on - strandat 2765.354 kb on - strandat 2765.411 kb on - strandat 2765.433 kb on - strandat 2765.434 kb on - strandat 2765.480 kb on + strandat 2765.536 kb on - strandat 2765.667 kb on - strandat 2765.991 kb on - strand, within yfjPat 2765.991 kb on - strand, within yfjPat 2766.049 kb on + strand, within yfjPat 2766.057 kb on - strand, within yfjPat 2766.100 kb on + strand, within yfjPat 2766.181 kb on - strand, within yfjPat 2766.201 kb on - strand, within yfjPat 2766.201 kb on - strand, within yfjPat 2766.216 kb on - strand, within yfjPat 2766.216 kb on - strand, within yfjPat 2766.395 kb on + strand, within yfjPat 2766.395 kb on + strand, within yfjPat 2766.395 kb on + strand, within yfjPat 2766.396 kb on + strand, within yfjPat 2766.396 kb on + strand, within yfjPat 2766.494 kb on - strand, within yfjPat 2766.677 kb on - strandat 2766.679 kb on + strandat 2766.679 kb on + strandat 2766.741 kb on + strandat 2766.779 kb on - strand, within yfjQat 2766.816 kb on + strand, within yfjQat 2766.905 kb on - strand, within yfjQat 2767.046 kb on - strand, within yfjQat 2767.051 kb on - strand, within yfjQat 2767.051 kb on - strand, within yfjQat 2767.051 kb on - strand, within yfjQat 2767.055 kb on + strand, within yfjQat 2767.134 kb on - strand, within yfjQat 2767.150 kb on - strand, within yfjQat 2767.229 kb on - strand, within yfjQat 2767.328 kb on - strand, within yfjQat 2767.342 kb on - strand, within yfjQat 2767.342 kb on - strand, within yfjQat 2767.420 kb on + strand, within yfjQat 2767.519 kb on + strandat 2767.563 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Papa dilution 10-1 cacl2 maltose
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2,764,748 + yfjN b2630 0.75 -0.7
2,764,761 - yfjN b2630 0.76 +1.0
2,764,908 + -1.0
2,764,976 - -0.5
2,765,212 - +1.6
2,765,336 - yfjO b2631 0.89 +0.9
2,765,354 - +0.8
2,765,354 - +1.6
2,765,411 - -0.5
2,765,433 - -0.5
2,765,434 - +0.9
2,765,480 + -0.8
2,765,536 - +0.8
2,765,667 - -0.8
2,765,991 - yfjP b2632 0.30 -0.8
2,765,991 - yfjP b2632 0.30 +0.3
2,766,049 + yfjP b2632 0.37 -0.8
2,766,057 - yfjP b2632 0.38 -1.5
2,766,100 + yfjP b2632 0.43 +0.3
2,766,181 - yfjP b2632 0.52 -0.4
2,766,201 - yfjP b2632 0.54 -0.1
2,766,201 - yfjP b2632 0.54 -1.8
2,766,216 - yfjP b2632 0.56 -1.0
2,766,216 - yfjP b2632 0.56 -0.7
2,766,395 + yfjP b2632 0.77 -0.5
2,766,395 + yfjP b2632 0.77 -0.9
2,766,395 + yfjP b2632 0.77 -0.3
2,766,396 + yfjP b2632 0.77 -0.5
2,766,396 + yfjP b2632 0.77 -0.5
2,766,494 - yfjP b2632 0.88 -0.5
2,766,677 - -0.4
2,766,679 + -0.4
2,766,679 + -1.2
2,766,741 + -0.7
2,766,779 - yfjQ b2633 0.11 -1.2
2,766,816 + yfjQ b2633 0.16 -1.2
2,766,905 - yfjQ b2633 0.27 -0.5
2,767,046 - yfjQ b2633 0.44 -0.6
2,767,051 - yfjQ b2633 0.44 -1.2
2,767,051 - yfjQ b2633 0.44 -0.1
2,767,051 - yfjQ b2633 0.44 +0.2
2,767,055 + yfjQ b2633 0.45 -0.8
2,767,134 - yfjQ b2633 0.54 -0.6
2,767,150 - yfjQ b2633 0.56 -0.0
2,767,229 - yfjQ b2633 0.66 +1.7
2,767,328 - yfjQ b2633 0.78 -0.6
2,767,342 - yfjQ b2633 0.80 -0.9
2,767,342 - yfjQ b2633 0.80 -0.9
2,767,420 + yfjQ b2633 0.89 -0.8
2,767,519 + +0.6
2,767,563 + +2.6

Or see this region's nucleotide sequence