Experiment: Growth at pH8 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3805 and PP_3806 are separated by 26 nucleotides PP_3806 and PP_3807 are separated by 56 nucleotides PP_3807 and PP_3808 overlap by 4 nucleotides PP_3808 and PP_3810 are separated by 133 nucleotides PP_3810 and PP_3811 are separated by 26 nucleotides
PP_3805: PP_3805 - lipoprotein required for swarming, at 4,333,144 to 4,334,196
_3805
PP_3806: PP_3806 - Hydrolase, isochorismatase family, at 4,334,223 to 4,334,774
_3806
PP_3807: PP_3807 - Thioesterase, at 4,334,831 to 4,335,550
_3807
PP_3808: PP_3808 - Antibiotic synthesis protein MbtH, at 4,335,547 to 4,335,768
_3808
PP_3810: PP_3810 - conserved protein of unknown function, at 4,335,902 to 4,336,303
_3810
PP_3811: PP_3811 - Transcriptional regulator, LysR family, at 4,336,330 to 4,337,214
_3811
Position (kb) 4334
4335
4336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4333.838 kb on + strand, within PP_3805 at 4333.838 kb on + strand, within PP_3805 at 4333.896 kb on + strand, within PP_3805 at 4333.896 kb on + strand, within PP_3805 at 4333.897 kb on - strand, within PP_3805 at 4333.897 kb on - strand, within PP_3805 at 4334.102 kb on - strand at 4334.245 kb on + strand at 4334.322 kb on + strand, within PP_3806 at 4334.322 kb on + strand, within PP_3806 at 4334.322 kb on + strand, within PP_3806 at 4334.575 kb on - strand, within PP_3806 at 4334.801 kb on + strand at 4335.051 kb on + strand, within PP_3807 at 4335.051 kb on + strand, within PP_3807 at 4335.051 kb on + strand, within PP_3807 at 4335.052 kb on - strand, within PP_3807 at 4335.052 kb on - strand, within PP_3807 at 4335.207 kb on + strand, within PP_3807 at 4335.207 kb on + strand, within PP_3807 at 4335.208 kb on - strand, within PP_3807 at 4335.208 kb on - strand, within PP_3807 at 4335.223 kb on + strand, within PP_3807 at 4335.339 kb on + strand, within PP_3807 at 4335.339 kb on + strand, within PP_3807 at 4335.339 kb on + strand, within PP_3807 at 4335.339 kb on + strand, within PP_3807 at 4335.339 kb on + strand, within PP_3807 at 4335.340 kb on - strand, within PP_3807 at 4335.447 kb on - strand, within PP_3807 at 4335.455 kb on + strand, within PP_3807 at 4335.456 kb on - strand, within PP_3807 at 4335.496 kb on - strand at 4335.520 kb on - strand at 4335.620 kb on + strand, within PP_3808 at 4335.704 kb on + strand, within PP_3808 at 4335.832 kb on + strand at 4335.832 kb on + strand at 4335.893 kb on + strand at 4335.894 kb on - strand at 4335.894 kb on - strand at 4335.896 kb on + strand at 4335.896 kb on + strand at 4335.897 kb on - strand at 4335.992 kb on - strand, within PP_3810 at 4336.062 kb on - strand at 4336.111 kb on - strand, within PP_3810 at 4336.297 kb on + strand at 4336.297 kb on + strand at 4336.298 kb on - strand at 4336.298 kb on - strand at 4336.314 kb on + strand at 4336.315 kb on - strand at 4336.315 kb on - strand at 4336.322 kb on - strand at 4336.492 kb on - strand, within PP_3811 at 4336.492 kb on - strand, within PP_3811 at 4336.505 kb on + strand, within PP_3811 at 4336.505 kb on + strand, within PP_3811 at 4336.505 kb on + strand, within PP_3811 at 4336.505 kb on + strand, within PP_3811 at 4336.506 kb on - strand, within PP_3811 at 4336.506 kb on - strand, within PP_3811 at 4336.506 kb on - strand, within PP_3811 at 4336.506 kb on - strand, within PP_3811
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) Trisodium citrate remove 4,333,838 + PP_3805 0.66 +0.1 4,333,838 + PP_3805 0.66 +0.3 4,333,896 + PP_3805 0.71 +0.5 4,333,896 + PP_3805 0.71 +0.2 4,333,897 - PP_3805 0.72 +0.4 4,333,897 - PP_3805 0.72 -0.9 4,334,102 - +0.6 4,334,245 + -0.3 4,334,322 + PP_3806 0.18 -0.0 4,334,322 + PP_3806 0.18 +0.5 4,334,322 + PP_3806 0.18 +0.1 4,334,575 - PP_3806 0.64 -0.1 4,334,801 + -3.0 4,335,051 + PP_3807 0.31 +1.0 4,335,051 + PP_3807 0.31 +1.1 4,335,051 + PP_3807 0.31 -2.6 4,335,052 - PP_3807 0.31 +3.2 4,335,052 - PP_3807 0.31 +2.0 4,335,207 + PP_3807 0.52 -0.0 4,335,207 + PP_3807 0.52 +1.2 4,335,208 - PP_3807 0.52 -0.1 4,335,208 - PP_3807 0.52 +0.1 4,335,223 + PP_3807 0.54 -0.9 4,335,339 + PP_3807 0.71 +0.9 4,335,339 + PP_3807 0.71 -0.1 4,335,339 + PP_3807 0.71 +0.2 4,335,339 + PP_3807 0.71 +2.0 4,335,339 + PP_3807 0.71 -1.2 4,335,340 - PP_3807 0.71 -1.3 4,335,447 - PP_3807 0.86 +0.6 4,335,455 + PP_3807 0.87 -0.8 4,335,456 - PP_3807 0.87 -0.6 4,335,496 - -0.3 4,335,520 - -1.3 4,335,620 + PP_3808 0.33 -0.1 4,335,704 + PP_3808 0.71 +0.8 4,335,832 + -1.1 4,335,832 + +0.7 4,335,893 + -2.5 4,335,894 - +1.3 4,335,894 - -0.3 4,335,896 + -0.6 4,335,896 + +0.2 4,335,897 - +0.3 4,335,992 - PP_3810 0.22 +0.3 4,336,062 - +1.5 4,336,111 - PP_3810 0.52 +0.3 4,336,297 + -3.4 4,336,297 + -0.6 4,336,298 - -1.4 4,336,298 - -2.0 4,336,314 + +0.5 4,336,315 - -2.2 4,336,315 - -2.3 4,336,322 - -0.5 4,336,492 - PP_3811 0.18 -0.0 4,336,492 - PP_3811 0.18 -0.7 4,336,505 + PP_3811 0.20 +0.4 4,336,505 + PP_3811 0.20 +0.0 4,336,505 + PP_3811 0.20 -0.4 4,336,505 + PP_3811 0.20 -0.1 4,336,506 - PP_3811 0.20 +1.0 4,336,506 - PP_3811 0.20 +0.5 4,336,506 - PP_3811 0.20 -2.9 4,336,506 - PP_3811 0.20 -0.7
Or see this region's nucleotide sequence