Strain Fitness in Pseudomonas putida KT2440 around PP_3713

Experiment: Growth at pH8 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3711 and PP_3712 are separated by 161 nucleotidesPP_3712 and PP_3713 are separated by 116 nucleotidesPP_3713 and PP_3714 are separated by 43 nucleotidesPP_3714 and PP_3715 are separated by 21 nucleotides PP_3711: PP_3711 - diguanylate cyclase, at 4,233,553 to 4,235,064 _3711 PP_3712: PP_3712 - conserved protein of unknown function, at 4,235,226 to 4,235,720 _3712 PP_3713: PP_3713 - Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data), at 4,235,837 to 4,236,772 _3713 PP_3714: PP_3714 - Muconolactone Delta-isomerase, at 4,236,816 to 4,237,106 _3714 PP_3715: PP_3715 - Muconate cycloisomerase 1, at 4,237,128 to 4,238,249 _3715 Position (kb) 4235 4236 4237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4234.889 kb on + strand, within PP_3711at 4234.901 kb on + strand, within PP_3711at 4234.902 kb on - strand, within PP_3711at 4234.902 kb on - strand, within PP_3711at 4234.974 kb on + strandat 4234.975 kb on - strandat 4234.975 kb on - strandat 4234.994 kb on + strandat 4234.995 kb on - strandat 4234.995 kb on - strandat 4234.995 kb on - strandat 4234.995 kb on - strandat 4234.995 kb on - strandat 4235.003 kb on + strandat 4235.004 kb on - strandat 4235.004 kb on - strandat 4235.033 kb on + strandat 4235.033 kb on + strandat 4235.033 kb on - strandat 4235.034 kb on - strandat 4235.071 kb on + strandat 4235.191 kb on + strandat 4235.191 kb on + strandat 4235.191 kb on + strandat 4235.198 kb on + strandat 4235.356 kb on + strand, within PP_3712at 4235.431 kb on + strand, within PP_3712at 4235.593 kb on + strand, within PP_3712at 4235.594 kb on - strand, within PP_3712at 4235.644 kb on + strand, within PP_3712at 4235.645 kb on - strand, within PP_3712at 4235.650 kb on + strand, within PP_3712at 4235.650 kb on + strand, within PP_3712at 4235.651 kb on - strand, within PP_3712at 4235.651 kb on - strand, within PP_3712at 4235.651 kb on - strand, within PP_3712at 4235.660 kb on - strand, within PP_3712at 4235.751 kb on + strandat 4235.751 kb on + strandat 4235.826 kb on + strandat 4235.826 kb on + strandat 4235.827 kb on - strandat 4235.827 kb on - strandat 4236.018 kb on + strand, within PP_3713at 4236.039 kb on + strand, within PP_3713at 4236.279 kb on + strandat 4236.279 kb on + strand, within PP_3713at 4236.280 kb on - strand, within PP_3713at 4236.286 kb on - strand, within PP_3713at 4236.286 kb on - strand, within PP_3713at 4236.444 kb on + strand, within PP_3713at 4236.444 kb on + strand, within PP_3713at 4236.444 kb on + strand, within PP_3713at 4236.444 kb on + strand, within PP_3713at 4236.444 kb on + strand, within PP_3713at 4236.444 kb on + strand, within PP_3713at 4236.445 kb on - strand, within PP_3713at 4236.779 kb on + strandat 4236.779 kb on + strandat 4236.779 kb on + strandat 4236.780 kb on - strandat 4236.786 kb on + strandat 4236.786 kb on + strandat 4236.786 kb on + strandat 4236.787 kb on - strandat 4236.787 kb on - strandat 4236.787 kb on - strandat 4236.787 kb on - strandat 4236.804 kb on + strandat 4236.804 kb on + strandat 4236.804 kb on + strandat 4236.804 kb on + strandat 4236.804 kb on + strandat 4236.804 kb on + strandat 4236.805 kb on - strandat 4236.805 kb on - strandat 4236.805 kb on - strandat 4236.805 kb on - strandat 4236.880 kb on + strand, within PP_3714at 4236.880 kb on + strand, within PP_3714at 4236.880 kb on + strand, within PP_3714at 4236.881 kb on - strand, within PP_3714at 4236.881 kb on - strand, within PP_3714at 4236.949 kb on + strand, within PP_3714at 4236.949 kb on + strand, within PP_3714at 4236.949 kb on + strand, within PP_3714at 4236.950 kb on - strand, within PP_3714at 4236.950 kb on - strand, within PP_3714at 4237.110 kb on + strandat 4237.111 kb on - strandat 4237.111 kb on - strandat 4237.358 kb on - strand, within PP_3715at 4237.609 kb on - strand, within PP_3715at 4237.645 kb on + strand, within PP_3715at 4237.646 kb on - strand, within PP_3715at 4237.646 kb on - strand, within PP_3715

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) Trisodium citrate
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4,234,889 + PP_3711 0.88 -0.3
4,234,901 + PP_3711 0.89 -3.0
4,234,902 - PP_3711 0.89 +2.1
4,234,902 - PP_3711 0.89 +0.7
4,234,974 + -0.3
4,234,975 - -1.4
4,234,975 - +0.3
4,234,994 + +0.6
4,234,995 - +0.5
4,234,995 - +1.1
4,234,995 - -0.1
4,234,995 - +0.6
4,234,995 - -1.5
4,235,003 + -0.5
4,235,004 - -3.5
4,235,004 - -2.1
4,235,033 + -1.4
4,235,033 + +0.4
4,235,033 - -0.2
4,235,034 - +0.5
4,235,071 + +1.4
4,235,191 + +0.7
4,235,191 + -0.8
4,235,191 + -1.0
4,235,198 + -1.5
4,235,356 + PP_3712 0.26 -0.1
4,235,431 + PP_3712 0.41 -1.4
4,235,593 + PP_3712 0.74 +0.2
4,235,594 - PP_3712 0.74 +0.6
4,235,644 + PP_3712 0.84 -0.9
4,235,645 - PP_3712 0.85 -1.2
4,235,650 + PP_3712 0.86 +0.1
4,235,650 + PP_3712 0.86 -0.8
4,235,651 - PP_3712 0.86 +1.3
4,235,651 - PP_3712 0.86 -0.7
4,235,651 - PP_3712 0.86 -1.2
4,235,660 - PP_3712 0.88 -0.3
4,235,751 + -1.0
4,235,751 + -1.0
4,235,826 + -0.1
4,235,826 + +0.6
4,235,827 - -1.0
4,235,827 - -0.5
4,236,018 + PP_3713 0.19 -1.8
4,236,039 + PP_3713 0.22 -1.1
4,236,279 + -0.1
4,236,279 + PP_3713 0.47 -1.6
4,236,280 - PP_3713 0.47 -0.6
4,236,286 - PP_3713 0.48 +0.3
4,236,286 - PP_3713 0.48 -0.4
4,236,444 + PP_3713 0.65 +0.0
4,236,444 + PP_3713 0.65 +1.0
4,236,444 + PP_3713 0.65 +0.2
4,236,444 + PP_3713 0.65 -1.4
4,236,444 + PP_3713 0.65 +0.1
4,236,444 + PP_3713 0.65 -0.5
4,236,445 - PP_3713 0.65 -0.6
4,236,779 + +1.6
4,236,779 + -1.1
4,236,779 + +0.8
4,236,780 - +0.2
4,236,786 + -2.1
4,236,786 + -0.9
4,236,786 + -0.5
4,236,787 - +0.8
4,236,787 - +0.6
4,236,787 - +0.4
4,236,787 - +0.5
4,236,804 + -0.1
4,236,804 + +1.1
4,236,804 + -0.4
4,236,804 + -2.7
4,236,804 + -0.5
4,236,804 + -0.7
4,236,805 - -0.5
4,236,805 - +2.1
4,236,805 - -0.1
4,236,805 - +0.0
4,236,880 + PP_3714 0.22 -0.1
4,236,880 + PP_3714 0.22 +1.0
4,236,880 + PP_3714 0.22 -0.3
4,236,881 - PP_3714 0.22 -1.4
4,236,881 - PP_3714 0.22 +0.8
4,236,949 + PP_3714 0.46 -0.1
4,236,949 + PP_3714 0.46 +2.1
4,236,949 + PP_3714 0.46 -0.4
4,236,950 - PP_3714 0.46 -0.6
4,236,950 - PP_3714 0.46 +0.5
4,237,110 + +0.8
4,237,111 - +0.4
4,237,111 - -0.1
4,237,358 - PP_3715 0.20 -0.8
4,237,609 - PP_3715 0.43 -0.1
4,237,645 + PP_3715 0.46 -1.0
4,237,646 - PP_3715 0.46 +1.4
4,237,646 - PP_3715 0.46 +1.9

Or see this region's nucleotide sequence