Strain Fitness in Pseudomonas putida KT2440 around PP_5726

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5238 and PP_5725 are separated by 9 nucleotidesPP_5725 and PP_5726 overlap by 7 nucleotides PP_5238: PP_5238 - conserved protein of unknown function, at 5,972,214 to 5,972,702 _5238 PP_5725: PP_5725 - protein of unknown function, at 5,972,712 to 5,972,999 _5725 PP_5726: PP_5726 - conserved protein of unknown function, at 5,972,993 to 5,973,688 _5726 Position (kb) 5972 5973 5974Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5972.051 kb on + strandat 5972.088 kb on - strandat 5972.196 kb on + strandat 5972.197 kb on - strandat 5972.229 kb on + strandat 5972.303 kb on + strand, within PP_5238at 5972.304 kb on - strand, within PP_5238at 5972.401 kb on - strand, within PP_5238at 5972.456 kb on - strand, within PP_5238at 5972.477 kb on - strand, within PP_5238at 5972.505 kb on + strand, within PP_5238at 5972.508 kb on + strand, within PP_5238at 5972.508 kb on + strand, within PP_5238at 5972.509 kb on - strand, within PP_5238at 5972.509 kb on - strand, within PP_5238at 5972.584 kb on + strand, within PP_5238at 5972.610 kb on - strand, within PP_5238at 5972.616 kb on + strand, within PP_5238at 5972.617 kb on - strand, within PP_5238at 5972.678 kb on + strandat 5972.679 kb on - strandat 5972.694 kb on - strandat 5972.695 kb on - strandat 5972.695 kb on - strandat 5972.695 kb on - strandat 5972.736 kb on - strandat 5972.754 kb on + strand, within PP_5725at 5972.754 kb on + strand, within PP_5725at 5972.755 kb on - strand, within PP_5725at 5972.834 kb on + strand, within PP_5725at 5972.835 kb on - strand, within PP_5725at 5972.845 kb on + strand, within PP_5725at 5972.867 kb on - strand, within PP_5725at 5973.002 kb on - strandat 5973.039 kb on + strandat 5973.153 kb on - strand, within PP_5726at 5973.178 kb on + strand, within PP_5726at 5973.200 kb on - strand, within PP_5726at 5973.230 kb on - strand, within PP_5726at 5973.359 kb on + strand, within PP_5726at 5973.360 kb on - strand, within PP_5726at 5973.361 kb on + strand, within PP_5726at 5973.400 kb on + strand, within PP_5726at 5973.401 kb on - strand, within PP_5726at 5973.453 kb on - strand, within PP_5726at 5973.521 kb on - strand, within PP_5726at 5973.522 kb on + strand, within PP_5726at 5973.523 kb on - strand, within PP_5726at 5973.526 kb on + strand, within PP_5726at 5973.526 kb on + strand, within PP_5726at 5973.527 kb on - strand, within PP_5726at 5973.527 kb on - strand, within PP_5726at 5973.527 kb on - strand, within PP_5726at 5973.569 kb on - strand, within PP_5726at 5973.569 kb on - strand, within PP_5726at 5973.569 kb on - strand, within PP_5726at 5973.569 kb on - strand, within PP_5726at 5973.569 kb on - strand, within PP_5726at 5973.579 kb on + strand, within PP_5726at 5973.580 kb on - strand, within PP_5726at 5973.580 kb on - strand, within PP_5726at 5973.591 kb on + strand, within PP_5726at 5973.607 kb on - strand, within PP_5726at 5973.607 kb on - strand, within PP_5726at 5973.697 kb on - strandat 5973.714 kb on - strandat 5973.764 kb on + strandat 5973.770 kb on - strandat 5973.864 kb on + strandat 5973.864 kb on + strandat 5973.918 kb on - strandat 5973.922 kb on - strandat 5973.951 kb on + strandat 5973.977 kb on + strandat 5973.997 kb on - strandat 5974.113 kb on - strandat 5974.196 kb on - strandat 5974.249 kb on + strandat 5974.249 kb on + strandat 5974.252 kb on + strandat 5974.252 kb on + strandat 5974.307 kb on + strandat 5974.307 kb on + strandat 5974.307 kb on + strandat 5974.308 kb on - strandat 5974.308 kb on - strandat 5974.361 kb on + strandat 5974.362 kb on - strandat 5974.383 kb on - strandat 5974.383 kb on - strandat 5974.404 kb on - strandat 5974.433 kb on - strandat 5974.557 kb on - strandat 5974.557 kb on - strandat 5974.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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5,972,051 + -2.5
5,972,088 - +0.4
5,972,196 + -0.8
5,972,197 - +0.6
5,972,229 + -0.3
5,972,303 + PP_5238 0.18 +1.5
5,972,304 - PP_5238 0.18 +0.2
5,972,401 - PP_5238 0.38 -1.7
5,972,456 - PP_5238 0.49 +0.0
5,972,477 - PP_5238 0.54 -1.0
5,972,505 + PP_5238 0.60 -2.7
5,972,508 + PP_5238 0.60 +0.0
5,972,508 + PP_5238 0.60 +0.3
5,972,509 - PP_5238 0.60 +1.3
5,972,509 - PP_5238 0.60 +1.0
5,972,584 + PP_5238 0.76 +0.2
5,972,610 - PP_5238 0.81 -1.3
5,972,616 + PP_5238 0.82 -2.9
5,972,617 - PP_5238 0.82 +0.6
5,972,678 + +0.3
5,972,679 - -1.6
5,972,694 - -0.3
5,972,695 - -0.6
5,972,695 - +0.7
5,972,695 - +1.0
5,972,736 - +0.4
5,972,754 + PP_5725 0.15 +1.4
5,972,754 + PP_5725 0.15 +1.1
5,972,755 - PP_5725 0.15 -1.4
5,972,834 + PP_5725 0.42 -1.0
5,972,835 - PP_5725 0.43 +1.4
5,972,845 + PP_5725 0.46 +1.3
5,972,867 - PP_5725 0.54 -0.6
5,973,002 - -2.6
5,973,039 + +0.1
5,973,153 - PP_5726 0.23 -0.7
5,973,178 + PP_5726 0.27 +2.0
5,973,200 - PP_5726 0.30 +2.2
5,973,230 - PP_5726 0.34 +1.4
5,973,359 + PP_5726 0.53 -2.0
5,973,360 - PP_5726 0.53 +1.2
5,973,361 + PP_5726 0.53 +0.2
5,973,400 + PP_5726 0.58 -0.1
5,973,401 - PP_5726 0.59 +0.5
5,973,453 - PP_5726 0.66 -0.2
5,973,521 - PP_5726 0.76 +1.8
5,973,522 + PP_5726 0.76 +0.0
5,973,523 - PP_5726 0.76 +1.1
5,973,526 + PP_5726 0.77 +1.5
5,973,526 + PP_5726 0.77 -0.6
5,973,527 - PP_5726 0.77 +0.0
5,973,527 - PP_5726 0.77 -1.6
5,973,527 - PP_5726 0.77 +1.0
5,973,569 - PP_5726 0.83 +0.9
5,973,569 - PP_5726 0.83 -0.2
5,973,569 - PP_5726 0.83 -2.0
5,973,569 - PP_5726 0.83 +1.0
5,973,569 - PP_5726 0.83 -1.1
5,973,579 + PP_5726 0.84 +2.8
5,973,580 - PP_5726 0.84 -3.2
5,973,580 - PP_5726 0.84 +1.6
5,973,591 + PP_5726 0.86 +1.0
5,973,607 - PP_5726 0.88 -3.0
5,973,607 - PP_5726 0.88 -0.6
5,973,697 - +1.3
5,973,714 - +0.9
5,973,764 + +1.4
5,973,770 - +0.8
5,973,864 + +0.5
5,973,864 + +1.8
5,973,918 - -0.7
5,973,922 - -2.4
5,973,951 + -1.4
5,973,977 + -0.4
5,973,997 - -2.8
5,974,113 - -2.3
5,974,196 - -0.8
5,974,249 + -0.2
5,974,249 + -0.9
5,974,252 + +0.0
5,974,252 + +0.2
5,974,307 + -0.4
5,974,307 + -1.7
5,974,307 + -3.2
5,974,308 - -0.7
5,974,308 - +0.9
5,974,361 + +0.4
5,974,362 - +2.1
5,974,383 - -2.5
5,974,383 - +1.2
5,974,404 - +1.3
5,974,433 - -0.8
5,974,557 - +1.2
5,974,557 - +1.2
5,974,606 + -0.8

Or see this region's nucleotide sequence