Strain Fitness in Pseudomonas putida KT2440 around PP_5122

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5120 and PP_5121 are separated by 10 nucleotidesPP_5121 and PP_5122 are separated by 20 nucleotidesPP_5122 and PP_5123 are separated by 112 nucleotidesPP_5123 and PP_5124 are separated by 101 nucleotides PP_5120: PP_5120 - coniferyl aldehyde dehydrogenase, at 5,841,432 to 5,842,862 _5120 PP_5121: PP_5121 - conserved exported protein of unknown function, at 5,842,873 to 5,843,358 _5121 PP_5122: PP_5122 - Oxidoreductase, GMC family, at 5,843,379 to 5,844,977 _5122 PP_5123: PP_5123 - Phosphopantetheine adenylyltransferase, at 5,845,090 to 5,845,575 _5123 PP_5124: PP_5124 - putative 4Fe-4S cluster-containing protein, at 5,845,677 to 5,845,928 _5124 Position (kb) 5843 5844 5845Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5842.391 kb on - strand, within PP_5120at 5842.391 kb on - strand, within PP_5120at 5842.401 kb on + strand, within PP_5120at 5842.402 kb on - strand, within PP_5120at 5842.501 kb on + strand, within PP_5120at 5842.510 kb on + strand, within PP_5120at 5842.518 kb on + strand, within PP_5120at 5842.519 kb on - strandat 5842.519 kb on - strand, within PP_5120at 5842.579 kb on - strand, within PP_5120at 5842.655 kb on + strand, within PP_5120at 5842.722 kb on + strandat 5842.722 kb on + strandat 5842.723 kb on - strandat 5843.255 kb on + strand, within PP_5121at 5843.255 kb on + strand, within PP_5121at 5843.256 kb on - strand, within PP_5121at 5843.256 kb on - strand, within PP_5121at 5843.302 kb on + strand, within PP_5121at 5843.302 kb on + strand, within PP_5121at 5843.545 kb on + strand, within PP_5122at 5843.611 kb on - strand, within PP_5122at 5843.623 kb on - strand, within PP_5122at 5843.663 kb on + strand, within PP_5122at 5843.664 kb on - strand, within PP_5122at 5843.664 kb on - strand, within PP_5122at 5844.005 kb on + strand, within PP_5122at 5844.005 kb on + strand, within PP_5122at 5844.005 kb on + strand, within PP_5122at 5844.005 kb on + strandat 5844.005 kb on + strand, within PP_5122at 5844.006 kb on - strand, within PP_5122at 5844.008 kb on - strand, within PP_5122at 5844.043 kb on - strand, within PP_5122at 5844.043 kb on - strand, within PP_5122at 5844.124 kb on + strand, within PP_5122at 5844.124 kb on + strand, within PP_5122at 5844.124 kb on + strand, within PP_5122at 5844.125 kb on - strand, within PP_5122at 5844.125 kb on - strand, within PP_5122at 5844.165 kb on + strand, within PP_5122at 5844.166 kb on - strand, within PP_5122at 5844.166 kb on - strand, within PP_5122at 5844.166 kb on - strand, within PP_5122at 5844.186 kb on - strand, within PP_5122at 5844.309 kb on + strand, within PP_5122at 5844.309 kb on + strand, within PP_5122at 5844.309 kb on + strand, within PP_5122at 5844.310 kb on - strand, within PP_5122at 5844.310 kb on - strand, within PP_5122at 5844.310 kb on - strand, within PP_5122at 5844.312 kb on + strand, within PP_5122at 5844.312 kb on + strand, within PP_5122at 5844.312 kb on + strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.382 kb on - strand, within PP_5122at 5844.479 kb on + strand, within PP_5122at 5844.479 kb on + strand, within PP_5122at 5844.502 kb on + strand, within PP_5122at 5844.502 kb on + strand, within PP_5122at 5844.619 kb on - strand, within PP_5122at 5844.664 kb on + strand, within PP_5122at 5844.678 kb on - strand, within PP_5122at 5844.678 kb on - strand, within PP_5122at 5844.918 kb on + strandat 5844.919 kb on - strandat 5844.919 kb on - strandat 5844.919 kb on - strandat 5844.919 kb on - strandat 5844.919 kb on - strandat 5844.919 kb on - strandat 5844.998 kb on + strandat 5844.999 kb on - strandat 5844.999 kb on - strandat 5844.999 kb on - strandat 5845.001 kb on - strandat 5845.001 kb on - strandat 5845.001 kb on - strandat 5845.903 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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5,842,391 - PP_5120 0.67 +0.4
5,842,391 - PP_5120 0.67 -4.4
5,842,401 + PP_5120 0.68 -1.0
5,842,402 - PP_5120 0.68 -3.7
5,842,501 + PP_5120 0.75 -0.3
5,842,510 + PP_5120 0.75 -0.0
5,842,518 + PP_5120 0.76 -1.9
5,842,519 - +1.6
5,842,519 - PP_5120 0.76 +0.1
5,842,579 - PP_5120 0.80 +0.5
5,842,655 + PP_5120 0.85 +0.5
5,842,722 + +0.6
5,842,722 + -3.7
5,842,723 - -2.2
5,843,255 + PP_5121 0.79 -0.6
5,843,255 + PP_5121 0.79 -1.3
5,843,256 - PP_5121 0.79 -0.7
5,843,256 - PP_5121 0.79 -2.0
5,843,302 + PP_5121 0.88 -1.2
5,843,302 + PP_5121 0.88 -1.1
5,843,545 + PP_5122 0.10 -0.5
5,843,611 - PP_5122 0.15 -0.6
5,843,623 - PP_5122 0.15 -0.1
5,843,663 + PP_5122 0.18 -0.6
5,843,664 - PP_5122 0.18 -3.9
5,843,664 - PP_5122 0.18 -4.0
5,844,005 + PP_5122 0.39 -2.7
5,844,005 + PP_5122 0.39 -3.2
5,844,005 + PP_5122 0.39 -1.1
5,844,005 + -0.4
5,844,005 + PP_5122 0.39 -1.4
5,844,006 - PP_5122 0.39 +0.6
5,844,008 - PP_5122 0.39 +1.0
5,844,043 - PP_5122 0.42 +0.9
5,844,043 - PP_5122 0.42 -0.6
5,844,124 + PP_5122 0.47 +0.6
5,844,124 + PP_5122 0.47 -3.9
5,844,124 + PP_5122 0.47 -1.2
5,844,125 - PP_5122 0.47 -3.0
5,844,125 - PP_5122 0.47 -1.7
5,844,165 + PP_5122 0.49 +1.4
5,844,166 - PP_5122 0.49 -1.7
5,844,166 - PP_5122 0.49 +0.3
5,844,166 - PP_5122 0.49 -3.1
5,844,186 - PP_5122 0.50 +0.4
5,844,309 + PP_5122 0.58 -0.3
5,844,309 + PP_5122 0.58 -3.8
5,844,309 + PP_5122 0.58 -0.0
5,844,310 - PP_5122 0.58 -1.0
5,844,310 - PP_5122 0.58 -0.4
5,844,310 - PP_5122 0.58 -0.5
5,844,312 + PP_5122 0.58 +0.0
5,844,312 + PP_5122 0.58 -1.9
5,844,312 + PP_5122 0.58 +0.3
5,844,313 - PP_5122 0.58 -2.2
5,844,313 - PP_5122 0.58 +0.9
5,844,313 - PP_5122 0.58 +0.9
5,844,313 - PP_5122 0.58 -0.5
5,844,313 - PP_5122 0.58 +1.2
5,844,313 - PP_5122 0.58 -1.9
5,844,382 - PP_5122 0.63 -2.3
5,844,479 + PP_5122 0.69 +0.8
5,844,479 + PP_5122 0.69 -0.1
5,844,502 + PP_5122 0.70 -3.0
5,844,502 + PP_5122 0.70 +0.5
5,844,619 - PP_5122 0.78 +0.5
5,844,664 + PP_5122 0.80 -3.2
5,844,678 - PP_5122 0.81 +0.6
5,844,678 - PP_5122 0.81 -0.3
5,844,918 + -0.3
5,844,919 - +0.9
5,844,919 - -1.9
5,844,919 - -0.9
5,844,919 - -3.6
5,844,919 - -0.4
5,844,919 - -1.1
5,844,998 + -0.5
5,844,999 - -0.7
5,844,999 - +0.4
5,844,999 - +0.7
5,845,001 - +0.5
5,845,001 - -1.9
5,845,001 - +2.6
5,845,903 - -1.4

Or see this region's nucleotide sequence