Strain Fitness in Pseudomonas putida KT2440 around PP_4926

Experiment: Growth at pH6 and (C) Trisodium citrate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4925 and PP_4926 are separated by 240 nucleotidesPP_4926 and PP_4927 overlap by 4 nucleotides PP_4925: PP_4925 - conserved protein of unknown function, at 5,603,478 to 5,604,287 _4925 PP_4926: PP_4926 - HlyD family secretion protein, at 5,604,528 to 5,605,946 _4926 PP_4927: PP_4927 - Cyclolysin secretion/processing ATP-binding protein CyaB, at 5,605,943 to 5,608,138 _4927 Position (kb) 5604 5605 5606Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5603.541 kb on - strandat 5603.629 kb on + strand, within PP_4925at 5603.668 kb on + strand, within PP_4925at 5603.788 kb on - strand, within PP_4925at 5603.812 kb on + strand, within PP_4925at 5603.875 kb on - strand, within PP_4925at 5603.888 kb on + strand, within PP_4925at 5603.909 kb on - strand, within PP_4925at 5603.947 kb on + strand, within PP_4925at 5603.948 kb on - strand, within PP_4925at 5604.266 kb on + strandat 5604.272 kb on + strandat 5604.278 kb on + strandat 5604.460 kb on - strandat 5604.498 kb on - strandat 5604.501 kb on + strandat 5604.501 kb on + strandat 5604.518 kb on + strandat 5604.587 kb on + strandat 5604.700 kb on + strand, within PP_4926at 5604.717 kb on - strand, within PP_4926at 5604.772 kb on + strand, within PP_4926at 5604.779 kb on + strand, within PP_4926at 5604.779 kb on + strand, within PP_4926at 5604.836 kb on + strand, within PP_4926at 5604.914 kb on + strand, within PP_4926at 5604.933 kb on - strand, within PP_4926at 5604.978 kb on + strand, within PP_4926at 5604.979 kb on - strand, within PP_4926at 5605.204 kb on + strand, within PP_4926at 5605.204 kb on + strand, within PP_4926at 5605.204 kb on + strand, within PP_4926at 5605.204 kb on + strand, within PP_4926at 5605.205 kb on - strand, within PP_4926at 5605.205 kb on - strand, within PP_4926at 5605.381 kb on + strand, within PP_4926at 5605.382 kb on - strand, within PP_4926at 5605.660 kb on - strand, within PP_4926at 5605.780 kb on + strand, within PP_4926at 5605.857 kb on + strandat 5605.858 kb on - strandat 5605.946 kb on + strandat 5605.977 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.983 kb on + strandat 5605.984 kb on - strandat 5605.984 kb on - strandat 5605.984 kb on - strandat 5605.984 kb on - strandat 5605.984 kb on - strandat 5605.984 kb on - strandat 5605.984 kb on - strandat 5606.076 kb on - strandat 5606.164 kb on - strand, within PP_4927at 5606.164 kb on - strand, within PP_4927at 5606.164 kb on - strand, within PP_4927at 5606.164 kb on - strand, within PP_4927at 5606.164 kb on - strand, within PP_4927at 5606.234 kb on + strand, within PP_4927at 5606.234 kb on + strand, within PP_4927at 5606.235 kb on - strand, within PP_4927at 5606.235 kb on - strand, within PP_4927at 5606.352 kb on - strand, within PP_4927at 5606.499 kb on - strand, within PP_4927at 5606.520 kb on + strand, within PP_4927at 5606.573 kb on + strand, within PP_4927at 5606.573 kb on + strand, within PP_4927at 5606.574 kb on - strand, within PP_4927at 5606.574 kb on - strand, within PP_4927at 5606.574 kb on - strand, within PP_4927at 5606.574 kb on - strandat 5606.582 kb on + strand, within PP_4927at 5606.726 kb on - strand, within PP_4927at 5606.762 kb on + strand, within PP_4927at 5606.910 kb on - strand, within PP_4927

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
remove
5,603,541 - +2.7
5,603,629 + PP_4925 0.19 +0.5
5,603,668 + PP_4925 0.23 -2.9
5,603,788 - PP_4925 0.38 -0.7
5,603,812 + PP_4925 0.41 +1.0
5,603,875 - PP_4925 0.49 -1.2
5,603,888 + PP_4925 0.51 +0.3
5,603,909 - PP_4925 0.53 -1.4
5,603,947 + PP_4925 0.58 -2.7
5,603,948 - PP_4925 0.58 -1.6
5,604,266 + +2.0
5,604,272 + -0.4
5,604,278 + +1.3
5,604,460 - -1.6
5,604,498 - -1.4
5,604,501 + +0.8
5,604,501 + +0.7
5,604,518 + +1.1
5,604,587 + +0.6
5,604,700 + PP_4926 0.12 +0.0
5,604,717 - PP_4926 0.13 -0.0
5,604,772 + PP_4926 0.17 +0.0
5,604,779 + PP_4926 0.18 -1.7
5,604,779 + PP_4926 0.18 -0.3
5,604,836 + PP_4926 0.22 -0.4
5,604,914 + PP_4926 0.27 +0.8
5,604,933 - PP_4926 0.29 +0.8
5,604,978 + PP_4926 0.32 -1.7
5,604,979 - PP_4926 0.32 -2.0
5,605,204 + PP_4926 0.48 -0.3
5,605,204 + PP_4926 0.48 +0.5
5,605,204 + PP_4926 0.48 +1.0
5,605,204 + PP_4926 0.48 -1.5
5,605,205 - PP_4926 0.48 +1.0
5,605,205 - PP_4926 0.48 +0.3
5,605,381 + PP_4926 0.60 -1.0
5,605,382 - PP_4926 0.60 +0.7
5,605,660 - PP_4926 0.80 +1.4
5,605,780 + PP_4926 0.88 -1.0
5,605,857 + +1.5
5,605,858 - -0.1
5,605,946 + +0.3
5,605,977 + +1.4
5,605,983 + +1.0
5,605,983 + +1.3
5,605,983 + +1.4
5,605,983 + -1.4
5,605,983 + +0.4
5,605,983 + -1.0
5,605,983 + -2.5
5,605,983 + -2.2
5,605,983 + +1.3
5,605,983 + -0.0
5,605,983 + -1.4
5,605,983 + +0.6
5,605,984 - -2.0
5,605,984 - +0.7
5,605,984 - +1.9
5,605,984 - +0.5
5,605,984 - -0.5
5,605,984 - -2.6
5,605,984 - +2.5
5,606,076 - -0.3
5,606,164 - PP_4927 0.10 -0.9
5,606,164 - PP_4927 0.10 -0.1
5,606,164 - PP_4927 0.10 +1.5
5,606,164 - PP_4927 0.10 -2.1
5,606,164 - PP_4927 0.10 +0.3
5,606,234 + PP_4927 0.13 +0.2
5,606,234 + PP_4927 0.13 -1.7
5,606,235 - PP_4927 0.13 -1.4
5,606,235 - PP_4927 0.13 +0.7
5,606,352 - PP_4927 0.19 -0.3
5,606,499 - PP_4927 0.25 -3.4
5,606,520 + PP_4927 0.26 +2.1
5,606,573 + PP_4927 0.29 -2.1
5,606,573 + PP_4927 0.29 -1.5
5,606,574 - PP_4927 0.29 +0.7
5,606,574 - PP_4927 0.29 +0.1
5,606,574 - PP_4927 0.29 -0.1
5,606,574 - +0.1
5,606,582 + PP_4927 0.29 +0.8
5,606,726 - PP_4927 0.36 +1.3
5,606,762 + PP_4927 0.37 +1.0
5,606,910 - PP_4927 0.44 -0.3

Or see this region's nucleotide sequence